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Commit e4682a9

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Tweak paths
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.github/workflows/dev-release.yml

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@@ -43,6 +43,6 @@ jobs:
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- name: Copy files to release directory
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run: |-
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gcloud storage rm -r gs://seqr-pipeline-runner-builds/releases/dev/latest/ || echo 'No latest release'
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gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/releases/dev/latest/bin/
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gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/releases/dev/latest/pyscripts.zip
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gcloud storage rm -r gs://seqr-pipeline-runner-builds/dev/latest/ || echo 'No latest release'
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gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/dev/latest/bin/
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gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/dev/latest/pyscripts.zip

.github/workflows/prod-release.yml

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@@ -45,11 +45,11 @@ jobs:
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- name: Copy files to release directory
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shell: bash
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run: |-
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gcloud storage rm -r gs://seqr-pipeline-runner-builds/releases/latest/ || echo 'No latest release'
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gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/releases/latest/bin/
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gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/releases/latest/pyscripts.zip
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gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/releases/${{ github.event.workflow_run.head_sha }}/bin/
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gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/releases/${{ github.event.workflow_run.head_sha }}/pyscripts.zip
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gcloud storage rm -r gs://seqr-pipeline-runner-builds/prod/latest/ || echo 'No latest release'
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gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/prod/latest/bin/
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gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/prod/latest/pyscripts.zip
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gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/prod/${{ github.event.workflow_run.head_sha }}/bin/
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gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/prod/${{ github.event.workflow_run.head_sha }}/pyscripts.zip
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gcloud storage cp -r v03_pipeline/var/vep/* gs://seqr-reference-data/vep/
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docker:

v03_pipeline/bin/dataproc_vep_init.bash

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@@ -53,10 +53,10 @@ EOF
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gcc -Wall -Werror -O2 /vep.c -o /vep
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chmod u+s /vep
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gcloud storage cp gs://seqr-pipeline-runner-builds/releases/$ENVIRONMENT/$PIPELINE_RUNNER_APP_VERSION/bin/download_vep_reference_data.bash /download_vep_reference_data.bash
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gcloud storage cp gs://seqr-pipeline-runner-builds/$ENVIRONMENT/$PIPELINE_RUNNER_APP_VERSION/bin/download_vep_reference_data.bash /download_vep_reference_data.bash
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chmod +x /download_vep_reference_data.bash
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./download_vep_reference_data.bash $REFERENCE_GENOME
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gcloud storage cp gs://seqr-pipeline-runner-builds/releases/$ENVIRONMENT/$PIPELINE_RUNNER_APP_VERSION/bin/vep /vep.bash
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gcloud storage cp gs://seqr-pipeline-runner-builds/$ENVIRONMENT/$PIPELINE_RUNNER_APP_VERSION/bin/vep /vep.bash
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chmod +x /vep.bash
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