File tree Expand file tree Collapse file tree 3 files changed +10
-10
lines changed Expand file tree Collapse file tree 3 files changed +10
-10
lines changed Original file line number Diff line number Diff line change 43
43
44
44
- name : Copy files to release directory
45
45
run : |-
46
- gcloud storage rm -r gs://seqr-pipeline-runner-builds/releases/ dev/latest/ || echo 'No latest release'
47
- gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/releases/ dev/latest/bin/
48
- gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/releases/ dev/latest/pyscripts.zip
46
+ gcloud storage rm -r gs://seqr-pipeline-runner-builds/dev/latest/ || echo 'No latest release'
47
+ gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/dev/latest/bin/
48
+ gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/dev/latest/pyscripts.zip
Original file line number Diff line number Diff line change @@ -45,11 +45,11 @@ jobs:
45
45
- name : Copy files to release directory
46
46
shell : bash
47
47
run : |-
48
- gcloud storage rm -r gs://seqr-pipeline-runner-builds/releases /latest/ || echo 'No latest release'
49
- gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/releases /latest/bin/
50
- gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/releases /latest/pyscripts.zip
51
- gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/releases /${{ github.event.workflow_run.head_sha }}/bin/
52
- gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/releases /${{ github.event.workflow_run.head_sha }}/pyscripts.zip
48
+ gcloud storage rm -r gs://seqr-pipeline-runner-builds/prod /latest/ || echo 'No latest release'
49
+ gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/prod /latest/bin/
50
+ gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/prod /latest/pyscripts.zip
51
+ gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/prod /${{ github.event.workflow_run.head_sha }}/bin/
52
+ gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/prod /${{ github.event.workflow_run.head_sha }}/pyscripts.zip
53
53
gcloud storage cp -r v03_pipeline/var/vep/* gs://seqr-reference-data/vep/
54
54
55
55
docker :
Original file line number Diff line number Diff line change 53
53
gcc -Wall -Werror -O2 /vep.c -o /vep
54
54
chmod u+s /vep
55
55
56
- gcloud storage cp gs://seqr-pipeline-runner-builds/releases/ $ENVIRONMENT /$PIPELINE_RUNNER_APP_VERSION /bin/download_vep_reference_data.bash /download_vep_reference_data.bash
56
+ gcloud storage cp gs://seqr-pipeline-runner-builds/$ENVIRONMENT /$PIPELINE_RUNNER_APP_VERSION /bin/download_vep_reference_data.bash /download_vep_reference_data.bash
57
57
chmod +x /download_vep_reference_data.bash
58
58
./download_vep_reference_data.bash $REFERENCE_GENOME
59
59
60
- gcloud storage cp gs://seqr-pipeline-runner-builds/releases/ $ENVIRONMENT /$PIPELINE_RUNNER_APP_VERSION /bin/vep /vep.bash
60
+ gcloud storage cp gs://seqr-pipeline-runner-builds/$ENVIRONMENT /$PIPELINE_RUNNER_APP_VERSION /bin/vep /vep.bash
61
61
chmod +x /vep.bash
62
62
You can’t perform that action at this time.
0 commit comments