double checkpoint just to be sure

bpblanken · bpblanken · commit e027cca5a00e · 2024-11-30T10:27:29.000-05:00
diff --git a/v03_pipeline/lib/reference_datasets/splice_ai.py b/v03_pipeline/lib/reference_datasets/splice_ai.py
@@ -23,6 +23,7 @@ def get_ht(
         compute_hail_n_partitions(file_size_bytes(checkpoint_path)),
         shuffle=False,
     )
+    ht, _ = checkpoint(ht)
 
     # SpliceAI INFO field description from the VCF header: SpliceAIv1.3 variant annotation. These include
     # delta scores (DS) and delta positions (DP) for acceptor gain (AG), acceptor loss (AL), donor gain (DG), and

Original file line number	Diff line number	Diff line change
`@@ -23,6 +23,7 @@ def get_ht(`
`23`	`23`	`compute_hail_n_partitions(file_size_bytes(checkpoint_path)),`
`24`	`24`	`shuffle=False,`
`25`	`25`	`)`
	`26`	`+ ht, _ = checkpoint(ht)`
`26`	`27`
`27`	`28`	`# SpliceAI INFO field description from the VCF header: SpliceAIv1.3 variant annotation. These include`
`28`	`29`	`# delta scores (DS) and delta positions (DP) for acceptor gain (AG), acceptor loss (AL), donor gain (DG), and`