Correct var

bpblanken · bpblanken · commit dd6e28d6b9d8 · 2024-03-27T17:34:28.000-04:00
diff --git a/v03_pipeline/lib/tasks/write_remapped_and_subsetted_callset.py b/v03_pipeline/lib/tasks/write_remapped_and_subsetted_callset.py
@@ -142,7 +142,7 @@ def create_table(self) -> hl.MatrixTable:
         if not len(loadable_families):
             msg = (
                 f'families_failed_missing_samples: {families_failed_missing_samples}\n'
-                f'families_failed_relatedness_check: {families_failed_missing_samples}\n'
+                f'families_failed_relatedness_check: {families_failed_relatedness_check}\n'
                 f'families_failed_sex_check: {families_failed_sex_check}'
             )
             logger.info(

Original file line number	Diff line number	Diff line change
`@@ -142,7 +142,7 @@ def create_table(self) -> hl.MatrixTable:`
`142`	`142`	`if not len(loadable_families):`
`143`	`143`	`msg = (`
`144`	`144`	`f'families_failed_missing_samples: {families_failed_missing_samples}\n'`
`145`		`- f'families_failed_relatedness_check: {families_failed_missing_samples}\n'`
	`145`	`+ f'families_failed_relatedness_check: {families_failed_relatedness_check}\n'`
`146`	`146`	`f'families_failed_sex_check: {families_failed_sex_check}'`
`147`	`147`	`)`
`148`	`148`	`logger.info(`