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Bump topmed
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v03_pipeline/lib/reference_datasets/reference_dataset.py

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@@ -282,12 +282,12 @@ def get_ht(
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ReferenceDataset.topmed: {
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ReferenceGenome.GRCh37: {
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DATASET_TYPES: frozenset([DatasetType.SNV_INDEL]),
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VERSION: '1.0',
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VERSION: '1.1',
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PATH: 'gs://seqr-reference-data/GRCh37/TopMed/bravo-dbsnp-all.removed_chr_prefix.liftunder_GRCh37.vcf.gz',
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},
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ReferenceGenome.GRCh38: {
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DATASET_TYPES: frozenset([DatasetType.SNV_INDEL]),
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VERSION: '1.0',
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VERSION: '1.1',
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# NB: TopMed data is available to download via https://legacy.bravo.sph.umich.edu/freeze8/hg38/downloads/vcf/<chrom>
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# However, users must be authenticated and accept TOS to access it so for now we will host a copy of the data
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PATH: 'gs://seqr-reference-data/GRCh38/TopMed/bravo-dbsnp-all.vcf.gz',
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This folder comprises a Hail (www.hail.is) native Table or MatrixTable.
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Written with version 0.2.133-4c60fddb171a
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Created at 2024/12/02 20:55:50

v03_pipeline/var/test/reference_datasets/GRCh37/topmed/1.1.ht/_SUCCESS

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