ugh

bpblanken · bpblanken · commit c05f6d409b5d · 2024-11-27T09:43:06.000-05:00
diff --git a/v03_pipeline/lib/reference_datasets/dbnsfp.py b/v03_pipeline/lib/reference_datasets/dbnsfp.py
@@ -68,7 +68,7 @@ def get_ht(path: str, reference_genome: ReferenceGenome) -> hl.Table:
         )
         # NB: We ran into weird issues...running out
         # of file descriptors on dataproc :/
-        ht = checkpoint(ht)
+        ht, _ = checkpoint(ht)
         select_fields = {'ref', 'alt', *types.keys(), *rename.keys()}
         ht = ht.select(
             *select_fields,

Original file line number	Diff line number	Diff line change
`@@ -68,7 +68,7 @@ def get_ht(path: str, reference_genome: ReferenceGenome) -> hl.Table:`
`68`	`68`	`)`
`69`	`69`	`# NB: We ran into weird issues...running out`
`70`	`70`	`# of file descriptors on dataproc :/`
`71`		`- ht = checkpoint(ht)`
	`71`	`+ ht, _ = checkpoint(ht)`
`72`	`72`	`select_fields = {'ref', 'alt', types.keys(), rename.keys()}`
`73`	`73`	`ht = ht.select(`
`74`	`74`	`*select_fields,`