Fix bug in paths

Author: bpblanken

v03_pipeline/lib/paths.py

@@ -352,7 +352,7 @@ def project_remap_path(
         ),
         'remaps',
         sample_type.value,
-        f'{project_guid}.ht',
+        f'{project_guid}_remap.tsv',
     )
 
 
@@ -370,7 +370,7 @@ def project_pedigree_path(
         ),
         'pedigrees',
         sample_type.value,
-        f'{project_guid}.ht',
+        f'{project_guid}_pedigree.tsv',
     )
 
 

v03_pipeline/lib/paths_test.py

@@ -239,7 +239,7 @@ def test_project_remap_path(self) -> None:
                 SampleType.WGS,
                 'R0652_pipeline_test',
             ),
-            '/var/seqr/seqr-loading-temp/v3.1/GRCh38/SNV_INDEL/remaps/WGS/R0652_pipeline_test.ht',
+            '/var/seqr/seqr-loading-temp/v3.1/GRCh38/SNV_INDEL/remaps/WGS/R0652_pipeline_remap.tsv',
         )
 
     def test_project_pedigree_path(self) -> None:
@@ -250,5 +250,5 @@ def test_project_pedigree_path(self) -> None:
                 SampleType.WES,
                 'R0652_pipeline_test',
             ),
-            '/var/seqr/seqr-loading-temp/v3.1/GRCh38/GCNV/pedigrees/WES/R0652_pipeline_test.ht',
+            '/var/seqr/seqr-loading-temp/v3.1/GRCh38/GCNV/pedigrees/WES/R0652_pipeline_pedigree.tsv',
         )