Add callset annotation to imported callset (#674)

bpblanken · web-flow · commit b14f6ac15ba9 · 2024-01-30T09:56:38.000-05:00
* Add callset annotation

* or missing

* One day I will learn hail

* Yikes

* Lint

* Tired
diff --git a/v03_pipeline/lib/tasks/write_imported_callset.py b/v03_pipeline/lib/tasks/write_imported_callset.py
@@ -104,5 +104,7 @@ def create_table(self) -> hl.MatrixTable:
                 self.sample_type,
             )
         return mt.annotate_globals(
+            callset_path=self.callset_path,
+            filters_path=self.filters_path or hl.missing(hl.tstr),
             sample_type=self.sample_type.value,
         )

Original file line number	Diff line number	Diff line change
`@@ -104,5 +104,7 @@ def create_table(self) -> hl.MatrixTable:`
`104`	`104`	`self.sample_type,`
`105`	`105`	`)`
`106`	`106`	`return mt.annotate_globals(`
	`107`	`+ callset_path=self.callset_path,`
	`108`	`+ filters_path=self.filters_path or hl.missing(hl.tstr),`
`107`	`109`	`sample_type=self.sample_type.value,`
`108`	`110`	`)`