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v03_pipeline/lib/tasks/update_lookup_table_test.py

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@@ -27,6 +27,7 @@ def test_skip_update_lookup_table_task(self) -> None:
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project_remap_paths=[TEST_REMAP],
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project_pedigree_paths=[TEST_PEDIGREE_3],
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skip_validation=True,
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skip_check_sex_and_relatedness=True,
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liftover_ref_path=TEST_LIFTOVER,
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)
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worker.add(uslt_task)
@@ -59,6 +60,7 @@ def test_update_lookup_table_task(self) -> None:
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project_remap_paths=[TEST_REMAP],
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project_pedigree_paths=[TEST_PEDIGREE_3],
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skip_validation=True,
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skip_check_sex_and_relatedness=True,
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liftover_ref_path=TEST_LIFTOVER,
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)
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worker.add(uslt_task)

v03_pipeline/lib/tasks/update_project_table_test.py

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@@ -23,6 +23,7 @@ def test_update_project_table_task(self) -> None:
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project_remap_path=TEST_REMAP,
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project_pedigree_path=TEST_PEDIGREE_3,
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skip_validation=True,
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skip_check_sex_and_relatedness=True,
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liftover_ref_path=TEST_LIFTOVER,
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)
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worker.add(upt_task)

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