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clinvar assertions and gold stars updates
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v03_pipeline/lib/reference_data/clinvar.py

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@@ -22,12 +22,15 @@
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'other',
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'protective',
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'risk_factor',
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'no_classification_for_the_single_variant',
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'no_classifications_from_unflagged_records',
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]
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CLINVAR_GOLD_STARS_LOOKUP = hl.dict(
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{
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'no_classification_for_the_single_variant': 0,
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'no_assertion_provided': 0,
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'no_classification_provided': 0,
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'no_assertion_criteria_provided': 0,
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'no_classifications_from_unflagged_records': 0,
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'criteria_provided,_single_submitter': 1,
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'criteria_provided,_conflicting_classifications': 1,
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'criteria_provided,_multiple_submitters,_no_conflicts': 2,

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