Fix mt

Author: bpblanken

v03_pipeline/lib/methods/relatedness.py

@@ -30,7 +30,7 @@ def call_relatedness(
     # - brew install lz4
     # - CXXFLAGS='-I/opt/homebrew/include/' HAIL_COMPILE_NATIVES=1 make -C hail install
     # Hail issue here: https://discuss.hail.is/t/noclassdeffounderror-could-not-initialize-class-is-hail-methods-ibsffi/2453
-    kin_ht = hl.identity_by_descent(mt, maf=mt.info.AF[1], min=0.10, max=1.0)
+    kin_ht = hl.identity_by_descent(mt, maf=mt.info.AF[0], min=0.10, max=1.0)
     kin_ht = kin_ht.key_by('i', 'j')
     return kin_ht.select(
         ibd0=kin_ht.ibd.Z0,

v03_pipeline/var/test/callsets/sex_and_relatedness_1.mt/.README.txt.crc

@@ -1,3 +1,3 @@
 This folder comprises a Hail (www.hail.is) native Table or MatrixTable.
-  Written with version 0.2.114-cc8d36408b36
-  Created at 2023/09/19 14:47:04
+  Written with version 0.2.128-eead8100a1c1
+  Created at 2024/03/13 11:46:28

v03_pipeline/var/test/callsets/sex_and_relatedness_1.mt/.metadata.json.gz.crc

@@ -1,3 +1,3 @@
 This folder comprises a Hail (www.hail.is) native Table or MatrixTable.
-  Written with version 0.2.114-cc8d36408b36
-  Created at 2023/09/19 14:47:04
+  Written with version 0.2.128-eead8100a1c1
+  Created at 2024/03/13 11:46:28