@@ -47,7 +47,7 @@ def test_family_table_path(self) -> None:
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SampleType .WES ,
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'franklin' ,
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),
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- '/seqr/hail-search-data/v3.1/GRCh37/SNV_INDEL/families/WES/franklin.ht' ,
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+ '/seqr/seqr- hail-search-data/v3.1/GRCh37/SNV_INDEL/families/WES/franklin.ht' ,
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)
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with patch ('v03_pipeline.lib.paths.Env' ) as mock_env :
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mock_env .HAIL_SEARCH_DATA_DIR = 'gs://seqr-datasets/'
@@ -89,7 +89,7 @@ def test_project_table_path(self) -> None:
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SampleType .WES ,
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'R0652_pipeline_test' ,
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),
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- '/seqr/hail-search-data/v3.1/GRCh38/MITO/projects/WES/R0652_pipeline_test.ht' ,
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+ '/seqr/seqr- hail-search-data/v3.1/GRCh38/MITO/projects/WES/R0652_pipeline_test.ht' ,
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)
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def test_valid_reference_dataset_collection_path (self ) -> None :
@@ -118,7 +118,7 @@ def test_lookup_table_path(self) -> None:
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ReferenceGenome .GRCh37 ,
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DatasetType .SV ,
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),
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- '/seqr/hail-search-data/v3.1/GRCh37/SV/lookup.ht' ,
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+ '/seqr/seqr- hail-search-data/v3.1/GRCh37/SV/lookup.ht' ,
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)
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def test_sex_check_table_path (self ) -> None :
@@ -148,7 +148,7 @@ def test_metadata_for_run_path(self) -> None:
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DatasetType .SNV_INDEL ,
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'manual__2023-06-26T18:30:09.349671+00:00' ,
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),
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- '/seqr/hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/metadata.json' ,
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+ '/seqr/seqr- hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/metadata.json' ,
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)
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def test_variant_annotations_table_path (self ) -> None :
@@ -157,7 +157,7 @@ def test_variant_annotations_table_path(self) -> None:
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ReferenceGenome .GRCh38 ,
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DatasetType .GCNV ,
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),
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- '/seqr/hail-search-data/v3.1/GRCh38/GCNV/annotations.ht' ,
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+ '/seqr/seqr- hail-search-data/v3.1/GRCh38/GCNV/annotations.ht' ,
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)
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def test_remapped_and_subsetted_callset_path (self ) -> None :
@@ -207,7 +207,7 @@ def test_new_variants_table_path(self) -> None:
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DatasetType .SNV_INDEL ,
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'manual__2023-06-26T18:30:09.349671+00:00' ,
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),
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- '/seqr/hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/new_variants.ht' ,
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+ '/seqr/seqr- hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/new_variants.ht' ,
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)
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def test_project_remap_path (self ) -> None :
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