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fix ruff
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v03_pipeline/lib/paths_test.py

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -47,7 +47,7 @@ def test_family_table_path(self) -> None:
4747
SampleType.WES,
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'franklin',
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),
50-
'/seqr/hail-search-data/v3.1/GRCh37/SNV_INDEL/families/WES/franklin.ht',
50+
'/seqr/seqr-hail-search-data/v3.1/GRCh37/SNV_INDEL/families/WES/franklin.ht',
5151
)
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with patch('v03_pipeline.lib.paths.Env') as mock_env:
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mock_env.HAIL_SEARCH_DATA_DIR = 'gs://seqr-datasets/'
@@ -89,7 +89,7 @@ def test_project_table_path(self) -> None:
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SampleType.WES,
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'R0652_pipeline_test',
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),
92-
'/seqr/hail-search-data/v3.1/GRCh38/MITO/projects/WES/R0652_pipeline_test.ht',
92+
'/seqr/seqr-hail-search-data/v3.1/GRCh38/MITO/projects/WES/R0652_pipeline_test.ht',
9393
)
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def test_valid_reference_dataset_collection_path(self) -> None:
@@ -118,7 +118,7 @@ def test_lookup_table_path(self) -> None:
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ReferenceGenome.GRCh37,
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DatasetType.SV,
120120
),
121-
'/seqr/hail-search-data/v3.1/GRCh37/SV/lookup.ht',
121+
'/seqr/seqr-hail-search-data/v3.1/GRCh37/SV/lookup.ht',
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)
123123

124124
def test_sex_check_table_path(self) -> None:
@@ -148,7 +148,7 @@ def test_metadata_for_run_path(self) -> None:
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DatasetType.SNV_INDEL,
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'manual__2023-06-26T18:30:09.349671+00:00',
150150
),
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'/seqr/hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/metadata.json',
151+
'/seqr/seqr-hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/metadata.json',
152152
)
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def test_variant_annotations_table_path(self) -> None:
@@ -157,7 +157,7 @@ def test_variant_annotations_table_path(self) -> None:
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ReferenceGenome.GRCh38,
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DatasetType.GCNV,
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),
160-
'/seqr/hail-search-data/v3.1/GRCh38/GCNV/annotations.ht',
160+
'/seqr/seqr-hail-search-data/v3.1/GRCh38/GCNV/annotations.ht',
161161
)
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def test_remapped_and_subsetted_callset_path(self) -> None:
@@ -207,7 +207,7 @@ def test_new_variants_table_path(self) -> None:
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DatasetType.SNV_INDEL,
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'manual__2023-06-26T18:30:09.349671+00:00',
209209
),
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'/seqr/hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/new_variants.ht',
210+
'/seqr/seqr-hail-search-data/v3.1/GRCh38/SNV_INDEL/runs/manual__2023-06-26T18:30:09.349671+00:00/new_variants.ht',
211211
)
212212

213213
def test_project_remap_path(self) -> None:

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