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Remove unused VEP fields
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v03_pipeline/lib/annotations/expression_helpers.py

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@@ -172,10 +172,8 @@ def get_expr_for_vep_sorted_transcript_consequences_array(
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'lof_filter',
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'lof_flags',
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'lof_info',
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'polyphen_prediction',
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'protein_id',
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'protein_start',
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'sift_prediction',
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],
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)
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@@ -302,9 +300,7 @@ def get_expr_for_worst_transcript_consequence_annotations_struct(
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'lof_flags': hl.tstr,
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'lof_filter': hl.tstr,
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'lof_info': hl.tstr,
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'polyphen_prediction': hl.tstr,
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'protein_id': hl.tstr,
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'sift_prediction': hl.tstr,
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},
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)
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