We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
There was an error while loading. Please reload this page.
1 parent 6f947d7 commit 86eb96eCopy full SHA for 86eb96e
v03_pipeline/lib/reference_data/clinvar.py
@@ -177,8 +177,13 @@ def download_and_import_clinvar_submission_summary() -> hl.Table:
177
delete=False,
178
) as tmp_file:
179
urllib.request.urlretrieve(CLINVAR_SUBMISSION_SUMMARY_URL, tmp_file.name) # noqa: S310
180
+ gcs_tmp_file_name = os.path.join(
181
+ Env.HAIL_TMPDIR,
182
+ os.path.basename(tmp_file.name),
183
+ )
184
+ safely_move_to_gcs(tmp_file.name, gcs_tmp_file_name)
185
return hl.import_table(
- tmp_file.name,
186
+ gcs_tmp_file_name,
187
force=True,
188
filter='^(#[^:]*:|^##).*$', # removes all comments except for the header line
189
types={
0 commit comments