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v03_pipeline/lib/reference_datasets/dbnsfp.py

Lines changed: 1 addition & 1 deletion
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@@ -70,7 +70,7 @@ def get_ht(path: str, reference_genome: ReferenceGenome) -> hl.Table:
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# NB: We ran into weird issues...running out
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# of file descriptors on dataproc :/
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ht, _ = checkpoint(ht)
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hl._set_flags(use_new_shuffle=None, no_whole_stage_codegen='1')
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hl._set_flags(use_new_shuffle=None, no_whole_stage_codegen='1') # noqa: SLF001
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select_fields = {'ref', 'alt', *types.keys(), *rename.keys()}
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ht = ht.select(
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*select_fields,

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