correct typo

bpblanken · bpblanken · commit 70b8cc43488e · 2024-06-17T11:15:21.000-04:00
diff --git a/v03_pipeline/lib/reference_data/clinvar.py b/v03_pipeline/lib/reference_data/clinvar.py
@@ -194,5 +194,6 @@ def download_and_import_clinvar_submission_summary() -> hl.Table:
             },
             missing='-',
         )
-        # NB: min_partitions fails with force=True but appears overrideable
-        return ht.reparition(MIN_HT_PARTITIONS)
+        # NB: min_partitions fails with force=True during `import_table`, but
+        # an immediate repartition here works.
+        return ht.repartition(MIN_HT_PARTITIONS)

Original file line number	Diff line number	Diff line change
`@@ -194,5 +194,6 @@ def download_and_import_clinvar_submission_summary() -> hl.Table:`
`194`	`194`	`},`
`195`	`195`	`missing='-',`
`196`	`196`	`)`
`197`		`- # NB: min_partitions fails with force=True but appears overrideable`
`198`		`- return ht.reparition(MIN_HT_PARTITIONS)`
	`197`	+ # NB: min_partitions fails with force=True during `import_table`, but
	`198`	`+ # an immediate repartition here works.`
	`199`	`+ return ht.repartition(MIN_HT_PARTITIONS)`