additional -x

bpblanken · bpblanken · commit 6ef30ad19528 · 2025-01-22T09:39:02.000-05:00
diff --git a/v03_pipeline/lib/tasks/dataproc/rsync_to_seqr_app_dirs_test.py b/v03_pipeline/lib/tasks/dataproc/rsync_to_seqr_app_dirs_test.py
@@ -97,7 +97,7 @@ def test_rsync_to_seqr_app_dirs_sync(
                     [
                         '/bin/bash',
                         '-cx',
-                        'mkdir -p /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && gsutil -qm rsync -rd -x gs://test-reference-data-dir/GRCh38/SNV_INDEL/high_af_variants.ht /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && sync /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht',
+                        'mkdir -p /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && gsutil -qm rsync -rd gs://test-reference-data-dir/GRCh38/SNV_INDEL/high_af_variants.ht /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && sync /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht',
                     ],
                 ),
                 call(

Original file line number	Diff line number	Diff line change
`@@ -97,7 +97,7 @@ def test_rsync_to_seqr_app_dirs_sync(`
`97`	`97`	`[`
`98`	`98`	`'/bin/bash',`
`99`	`99`	`'-cx',`
`100`		`- 'mkdir -p /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && gsutil -qm rsync -rd -x gs://test-reference-data-dir/GRCh38/SNV_INDEL/high_af_variants.ht /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && sync /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht',`
	`100`	`+ 'mkdir -p /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && gsutil -qm rsync -rd gs://test-reference-data-dir/GRCh38/SNV_INDEL/high_af_variants.ht /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht && sync /var/seqr/seqr-reference-data/GRCh38/SNV_INDEL/high_af_variants.ht',`
`101`	`101`	`],`
`102`	`102`	`),`
`103`	`103`	`call(`