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1 parent 990a854 commit 6cda1e0Copy full SHA for 6cda1e0
v03_pipeline/lib/misc/validation.py
@@ -22,9 +22,9 @@ def validate_allele_type(
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),
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)
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if ht.count() > 0:
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- collected_alleles = sorted([
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- tuple(x) for x in ht.aggregate(hl.agg.collect_as_set(ht.alleles))
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- ])
+ collected_alleles = sorted(
+ [tuple(x) for x in ht.aggregate(hl.agg.collect_as_set(ht.alleles))]
+ )
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msg = f'Alleles with invalid AlleleType are present in the callset: {collected_alleles}'
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raise SeqrValidationError(msg)
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