index_globals

bpblanken · bpblanken · commit 5d61a4e9d14b · 2024-03-06T22:56:07.000-05:00
diff --git a/v03_pipeline/lib/tasks/update_lookup_table.py b/v03_pipeline/lib/tasks/update_lookup_table.py
@@ -104,7 +104,7 @@ def update_table(self, ht: hl.Table) -> hl.Table:
         ht = remove_new_callset_family_guids(
             ht,
             self.project_guid,
-            callset_mt.family_samples.key_set(),
+            callset_mt.index_globals().family_samples.key_set(),
         )
         callset_ht = compute_callset_lookup_ht(
             self.dataset_type,
diff --git a/v03_pipeline/lib/tasks/update_project_table.py b/v03_pipeline/lib/tasks/update_project_table.py
@@ -106,7 +106,7 @@ def update_table(self, ht: hl.Table) -> hl.Table:
             )
         ht = remove_new_callset_family_guids(
             ht,
-            callset_mt.family_samples.key_set(),
+            callset_mt.index_globals().family_samples.key_set(),
         )
         ht = join_family_entries_hts(ht, callset_ht)
         return ht.select_globals(

Original file line number	Diff line number	Diff line change
`@@ -104,7 +104,7 @@ def update_table(self, ht: hl.Table) -> hl.Table:`
`104`	`104`	`ht = remove_new_callset_family_guids(`
`105`	`105`	`ht,`
`106`	`106`	`self.project_guid,`
`107`		`- callset_mt.family_samples.key_set(),`
	`107`	`+ callset_mt.index_globals().family_samples.key_set(),`
`108`	`108`	`)`
`109`	`109`	`callset_ht = compute_callset_lookup_ht(`
`110`	`110`	`self.dataset_type,`
Original file line number	Diff line number	Diff line change
`@@ -106,7 +106,7 @@ def update_table(self, ht: hl.Table) -> hl.Table:`
`106`	`106`	`)`
`107`	`107`	`ht = remove_new_callset_family_guids(`
`108`	`108`	`ht,`
`109`		`- callset_mt.family_samples.key_set(),`
	`109`	`+ callset_mt.index_globals().family_samples.key_set(),`
`110`	`110`	`)`
`111`	`111`	`ht = join_family_entries_hts(ht, callset_ht)`
`112`	`112`	`return ht.select_globals(`