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v03_pipeline/lib/tasks/write_relatedness_check_table_test.py

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@@ -24,6 +24,8 @@
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TEST_GNOMAD_QC_HT = 'v03_pipeline/var/test/reference_data/gnomad_qc_crdq.ht'
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TEST_VCF = 'v03_pipeline/var/test/callsets/1kg_30variants.vcf'
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TEST_RUN_ID = 'manual__2024-04-03'
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MOCK_CONFIG = {
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'gnomad_qc': {
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'38': {
@@ -89,6 +91,7 @@ def test_relatedness_check_table_task_gnomad_qc_updated(
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task = WriteRelatednessCheckTableTask(
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reference_genome=ReferenceGenome.GRCh38,
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dataset_type=DatasetType.SNV_INDEL,
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run_id=TEST_RUN_ID,
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sample_type=SampleType.WGS,
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callset_path=TEST_VCF,
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)

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