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lines changed Original file line number Diff line number Diff line change 13
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project_pedigree_path ,
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project_remap_path ,
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)
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- < << << << HEAD
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- from v03_pipeline .lib .tasks import (
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- UpdateVariantAnnotationsTableWithNewSamplesTask ,
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- )
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- == == == =
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- >> >> >> > 92 f827224f608388fc4e20be60a08b1f675c7408
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from v03_pipeline .lib .tasks .trigger_hail_backend_reload import TriggerHailBackendReload
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from v03_pipeline .lib .tasks .write_success_file import WriteSuccessFileTask
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@@ -60,18 +54,6 @@ def main():
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'run_id' : run_id ,
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** {k : v for k , v in lpr .model_dump ().items () if k != 'projects_to_run' },
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}
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- < << << << HEAD
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- tasks = [
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- UpdateVariantAnnotationsTableWithNewSamplesTask (
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- ** loading_run_task_params ,
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- ),
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- WriteSuccessFileTask (** loading_run_task_params ),
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- ]
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- if Env .SHOULD_TRIGGER_HAIL_BACKEND_RELOAD :
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- tasks .append (
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- TriggerHailBackendReload (** loading_run_task_params ),
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- )
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- == == == =
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if Env .SHOULD_TRIGGER_HAIL_BACKEND_RELOAD :
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tasks = [
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TriggerHailBackendReload (** loading_run_task_params ),
@@ -80,7 +62,6 @@ def main():
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tasks = [
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WriteSuccessFileTask (** loading_run_task_params ),
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]
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- > >> >> >> 92 f827224f608388fc4e20be60a08b1f675c7408
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luigi .build (tasks )
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except Exception :
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logger .exception ('Unhandled Exception' )
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BaseLoadingRunWithProjectInfoParams ,
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)
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from v03_pipeline .lib .tasks .files import GCSorLocalTarget
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+ from v03_pipeline .lib .tasks .update_variant_annotations_table_with_new_samples import (
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+ UpdateVariantAnnotationsTableWithNewSamplesTask ,
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+ )
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@luigi .util .inherits (BaseLoadingRunWithProjectInfoParams )
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