missing param

Author: bpblanken

v03_pipeline/lib/tasks/base/base_loading_run_params.py

@@ -18,6 +18,10 @@ class BaseLoadingRunParams(luigi.Task):
         default=None,
         description='Optional path to part two outputs from callset (VCF shards containing filter information)',
     )
+    ignore_missing_samples_when_remapping = luigi.BoolParameter(
+        default=False,
+        parsing=luigi.BoolParameter.EXPLICIT_PARSING,
+    )
     validate = luigi.BoolParameter(
         default=True,
         parsing=luigi.BoolParameter.EXPLICIT_PARSING,

v03_pipeline/lib/tasks/write_metadata_for_run.py

@@ -50,7 +50,7 @@ def requires(self) -> list[luigi.Task]:
 
     def run(self) -> None:
         metadata_json = {
-            'callsets': self.callset_paths,
+            'callsets': [self.callset],
             'run_id': self.run_id,
             'sample_type': self.sample_type.value,
             'family_samples': {},