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remove get_validation_dependencies
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v03_pipeline/lib/tasks/validate_callset.py

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@@ -28,16 +28,6 @@
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@luigi.util.inherits(BaseLoadingRunParams)
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class ValidateCallsetTask(BaseUpdateTask):
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def get_validation_dependencies(self) -> dict[str, hl.Table]:
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deps = {}
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deps['coding_and_noncoding_variants_ht'] = hl.read_table(
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valid_reference_dataset_path(
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self.reference_genome,
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ReferenceDataset.gnomad_coding_and_noncoding,
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),
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)
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return deps
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def complete(self) -> luigi.Target:
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if super().complete():
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mt = hl.read_matrix_table(self.output().path)

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