Merge branch 'dev' of github.com:broadinstitute/seqr-loading-pipelines into benb/i_guess_this_is_sufficient

Author: bpblanken

v03_pipeline/lib/misc/family_entries.py

@@ -115,6 +115,7 @@ def remove_family_guids(
         if len(family_indexes_to_keep) > 0
         else hl.empty_array(ht.family_entries.dtype.element_type),
     )
+    ht = ht.filter(hl.any(ht.family_entries.map(hl.is_defined)))
     return ht.annotate_globals(
         family_guids=ht.family_guids.filter(
             lambda f: ~family_guids.contains(f),

v03_pipeline/lib/misc/family_entries_test.py

@@ -273,13 +273,6 @@ def test_remove_family_guids(self) -> None:
                         ],
                     ],
                 ),
-                hl.Struct(
-                    id=1,
-                    filters={'HIGH_SR_BACKGROUND'},
-                    family_entries=[
-                        None,
-                    ],
-                ),
             ],
         )