Remove arg

bpblanken · bpblanken · commit 2b8cd669cbbe · 2024-02-29T18:33:21.000-05:00
diff --git a/v03_pipeline/lib/annotations/fields_test.py b/v03_pipeline/lib/annotations/fields_test.py
@@ -41,7 +41,6 @@ def test_get_formatting_fields(self, mock_vep: Mock, mock_validate: Mock) -> Non
             ht,
             DatasetType.SNV_INDEL,
             ReferenceGenome.GRCh38,
-            None,
         )
         ht = ht.annotate(rsid='abcd')
         for reference_genome, expected_fields in [
diff --git a/v03_pipeline/lib/annotations/shared_test.py b/v03_pipeline/lib/annotations/shared_test.py
@@ -40,7 +40,6 @@ def test_sorted_transcript_consequences(
             ht,
             DatasetType.SNV_INDEL,
             ReferenceGenome.GRCh38,
-            None,
         )
         ht = ht.select(
             sorted_transcript_consequences=sorted_transcript_consequences(ht),

Original file line number	Diff line number	Diff line change
`@@ -41,7 +41,6 @@ def test_get_formatting_fields(self, mock_vep: Mock, mock_validate: Mock) -> Non`
`41`	`41`	`ht,`
`42`	`42`	`DatasetType.SNV_INDEL,`
`43`	`43`	`ReferenceGenome.GRCh38,`
`44`		`- None,`
`45`	`44`	`)`
`46`	`45`	`ht = ht.annotate(rsid='abcd')`
`47`	`46`	`for reference_genome, expected_fields in [`
Original file line number	Diff line number	Diff line change
`@@ -40,7 +40,6 @@ def test_sorted_transcript_consequences(`
`40`	`40`	`ht,`
`41`	`41`	`DatasetType.SNV_INDEL,`
`42`	`42`	`ReferenceGenome.GRCh38,`
`43`		`- None,`
`44`	`43`	`)`
`45`	`44`	`ht = ht.select(`
`46`	`45`	`sorted_transcript_consequences=sorted_transcript_consequences(ht),`