Merge pull request #714 from broadinstitute/benb/add_logging_here

Improve logging.

Author: bpblanken

v03_pipeline/lib/tasks/reference_data/update_variant_annotations_table_with_updated_reference_dataset.py

@@ -1,6 +1,7 @@
 import hail as hl
 
 from v03_pipeline.lib.annotations.fields import get_fields
+from v03_pipeline.lib.logger import get_logger
 from v03_pipeline.lib.model import ReferenceDatasetCollection
 from v03_pipeline.lib.reference_data.compare_globals import (
     Globals,
@@ -10,6 +11,8 @@
     BaseVariantAnnotationsTableTask,
 )
 
+logger = get_logger(__name__)
+
 
 class UpdateVariantAnnotationsTableWithUpdatedReferenceDataset(
     BaseVariantAnnotationsTableTask,
@@ -56,6 +59,7 @@ def complete(self) -> bool:
                     self.dataset_type,
                 ),
             )
+        logger.info(f'Datasets to update: {self._datasets_to_update}')
         return not self._datasets_to_update
 
     def update_table(self, ht: hl.Table) -> hl.Table: