v0.7

Imputation/PRS

• separate multiallelics annotate correctly (#21)
• SeparateMultiallelics typo (#22)
• Output metrics from imputation pipeline (#26)
• remove duplicate input (#28)
• Recover sites from original array (#30)
• Validation Workflows for Imputation/PRS (#31)
• Add chunk buffer regions for imputation (#32)
• split multisample vcf into single sample vcfs at end of imputation pipeline (#33)

BenchmarkVCFs

• add BenchmarkVCFs to dockstore yml (#8)
• use gcr instead of dockerhub in Benchmarking wdl (#25)

v0.6

Imputation Pipeline

• Constrain PCA to high call rate sites, and allow for intersection of multiple array sites for PCA (#20)

v0.5

Imputation/PRS

• Reference panel input/genome build now flexible, no longer hardcoded (#17)

v0.4

Imputation/PRS

• Improvement to population PCA calculations (#13)
• significant speedup in imputation pipeline for large cohorts (#14)

v0.3

Updated for clinical validation of arrays pipeline

Imputation and PRS pipeline added

Adds Imputation and PRS pipelines

first release

Testing by running with plumbing data (#5)

Add infrastructure for testing by running workflows with plumbing data, and some tests for BenchmarkVCFs