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FROM ubuntu:22.10
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RUN apt update
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- RUN apt install -y git python3 python3-pip wget libbz2-dev liblzma-dev libcurl4-openssl-dev
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+ RUN apt install -y git python3 python-is-python3 python3-pip wget libbz2-dev liblzma-dev libcurl4-openssl-dev
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RUN pip install pandas
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Original file line number Diff line number Diff line change @@ -14,11 +14,12 @@ the fields are populated:
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* Directory: BCFTools
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* Description: A docker image containing an installation of [ bcftools] ( https://samtools.github.io/bcftools/bcftools.html ) .
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Also includes some minimal Python tools (pandas) for data processing.
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- * Location: ` us.gcr.io/broad-dsde-methods/bcftools:v1.0 `
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+ * Location: ` us.gcr.io/broad-dsde-methods/bcftools:v1.1 `
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* Used By: [ SimpleBenchmark] ( ../../BenchmarkVCFs/SimpleBenchmark.wdl )
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* Usage: ` bcftools [COMMAND] `
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* Version Notes:
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* 1.0: Versions are ` bcftools ` 1.16.
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+ * 1.1: Added the ` python-is-python3 ` package so that ` python ` is a valid command.
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## samtools
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