Created python-data-slim-plots and using it in FunctionalEquivalence WDLs (#111)

* Created new image for plotting based on python-data-slim
* Changed FE tasks to new python-data-slim-plots image

Author: michaelgatzen

FunctionalEquivalence/FunctionalEquivalence.wdl

@@ -383,8 +383,6 @@ task CreateHTMLReport {
 
     command <<<
         set -xeuo pipefail
-        
-        source activate fe_evaluation
 
         fe_plots_base64=$(base64 -w 0 ~{merged_fe_plots})
         f1_plots_base64=$(base64 -w 0 ~{merged_f1_plots})
@@ -444,7 +442,7 @@ EOF
     >>>
 
     runtime {
-        docker: "us.gcr.io/broad-dsde-methods/functionalequivalence/fe_evaluation:1.0.0"
+        docker: "us.gcr.io/broad-dsde-methods/python-data-slim-plots:1.0"
         preemptible: select_first([preemptible, 0])
         memory: "2 GB"
         disks: "local-disk 20 HDD"

FunctionalEquivalence/docker/fe_evaluation/Dockerfile

@@ -48,8 +48,6 @@ task F1EvaluationTask {
     command <<<
         set -xeuo pipefail
 
-        source activate fe_evaluation
-        
         cat <<'EOF' > script.py
 import numpy as np
 import matplotlib
@@ -332,7 +330,7 @@ EOF
     }
 
     runtime {
-        docker: "us.gcr.io/broad-dsde-methods/functionalequivalence/fe_evaluation:1.0.0"
+        docker: "us.gcr.io/broad-dsde-methods/python-data-slim-plots:1.0"
         preemptible: select_first([preemptible, 0])
         memory: machine_mem_gb + " GB"
         disks: "local-disk 20 HDD"

FunctionalEquivalence/docker/fe_evaluation/environment.yml

@@ -46,8 +46,6 @@ task FEEvaluationTask {
     command <<<
         set -xeuo pipefail
 
-        source activate fe_evaluation
-        
         cat <<EOF > script.py
 import matplotlib.pyplot as plt
 import argparse
@@ -267,7 +265,7 @@ EOF
     }
 
     runtime {
-        docker: "us.gcr.io/broad-dsde-methods/functionalequivalence/fe_evaluation:1.0.0"
+        docker: "us.gcr.io/broad-dsde-methods/python-data-slim-plots:1.0"
         preemptible: select_first([preemptible, 0])
         memory: machine_mem_gb + " GB"
         disks: "local-disk 20 HDD"

FunctionalEquivalence/subworkflows/F1Evaluation.wdl

@@ -47,8 +47,6 @@ task PlotROCTask {
 
     command <<<
         set -xeuo pipefail
-        
-        source activate fe_evaluation
 
         cat <<'EOF' > script.py
 import matplotlib
@@ -197,7 +195,7 @@ EOF
     }
 
     runtime {
-        docker: "us.gcr.io/broad-dsde-methods/functionalequivalence/fe_evaluation:1.0.0"
+        docker: "us.gcr.io/broad-dsde-methods/python-data-slim-plots:1.0"
         preemptible: select_first([preemptible, 0])
         disks: "local-disk 200 HDD"
     }

FunctionalEquivalence/subworkflows/FEEvaluation.wdl

@@ -0,0 +1,2 @@
+FROM us.gcr.io/broad-dsde-methods/python-data-slim:1.0
+RUN pip install matplotlib==3.5.3 plotly==5.10.0

FunctionalEquivalence/subworkflows/PlotROC.wdl

@@ -14,3 +14,12 @@ with the libraries `pandas`, `numpy`, `scipy`, `firecloud`, `fsspec` (a `fireclo
 * Version Notes: 
     * 1.0: Versions are `python3` 3.9.9, `pandas` 1.3.4, `numpy` 1.21.4, `scipy` 1.7.2, `firecloud` 0.16.32, 
     `fsspec` 2022.7.1, `gcsfs` 2022.7.1.
+
+## python-data-slim-plots
+
+* Directory: Python-Data-Slim-Plots
+* Description: Based on `python-data-slim`, this image supports plotting with [matplotlib](https://matplotlib.org/) and [Plotly](https://plotly.com/)
+* Location: `us.gcr.io/broad-dsde-methods/python-data-slim-plots`
+* Used By: [FunctionalEquivalence](../../FunctionalEquivalence/FunctionalEquivalence.wdl)
+* Version Notes: 
+    * 1.0: Versions are `matplotlib` 3.5.3, `plotly` 5.10.0.