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Quick Fix to QuickstartIntegration test in EchoCallSet branch (#8737)
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scripts/variantstore/wdl/GvsQuickstartHailIntegration.wdl

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Original file line numberDiff line numberDiff line change
@@ -109,8 +109,8 @@ workflow GvsQuickstartHailIntegration {
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git_branch_or_tag = git_branch_or_tag,
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hail_version = effective_hail_version,
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use_classic_VQSR = !use_VQSR_lite,
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avro_path = GvsExtractAvroFilesForHail.avro_prefix,
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vds_destination_path = GvsExtractAvroFilesForHail.vds_output_path,
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avro_path = GvsExtractAvroFilesForHail.avro_path,
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vds_destination_path = GvsExtractAvroFilesForHail.avro_path + "/gvs_export.vds",
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cluster_prefix = "vds-cluster",
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gcs_subnetwork_name = "subnetwork",
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region = "us-central1",
@@ -125,7 +125,7 @@ workflow GvsQuickstartHailIntegration {
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input:
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go = GvsCreateVDS.done,
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git_branch_or_tag = git_branch_or_tag,
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vds_path = GvsExtractAvroFilesForHail.vds_output_path,
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vds_path = GvsExtractAvroFilesForHail.avro_path + "/gvs_export.vds",
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tieout_vcfs = GvsQuickstartVcfIntegration.output_vcfs,
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tieout_vcf_indexes = GvsQuickstartVcfIntegration.output_vcf_indexes,
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cloud_sdk_slim_docker = effective_cloud_sdk_slim_docker,
@@ -137,7 +137,7 @@ workflow GvsQuickstartHailIntegration {
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Array[File] output_vcf_indexes = GvsQuickstartVcfIntegration.output_vcf_indexes
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Float total_vcfs_size_mb = GvsQuickstartVcfIntegration.total_vcfs_size_mb
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File manifest = GvsQuickstartVcfIntegration.manifest
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String vds_output_path = GvsExtractAvroFilesForHail.vds_output_path
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String vds_output_path = GvsExtractAvroFilesForHail.avro_path + "/gvs_export.vds"
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String recorded_git_hash = effective_git_hash
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Boolean done = true
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Boolean used_tighter_gcp_quotas = GvsQuickstartVcfIntegration.used_tighter_gcp_quotas

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