@@ -109,8 +109,8 @@ workflow GvsQuickstartHailIntegration {
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git_branch_or_tag = git_branch_or_tag ,
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hail_version = effective_hail_version ,
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use_classic_VQSR = !use_VQSR_lite ,
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- avro_path = GvsExtractAvroFilesForHail .avro_prefix ,
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- vds_destination_path = GvsExtractAvroFilesForHail .vds_output_path ,
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+ avro_path = GvsExtractAvroFilesForHail .avro_path ,
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+ vds_destination_path = GvsExtractAvroFilesForHail .avro_path + "/gvs_export.vds" ,
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cluster_prefix = "vds-cluster" ,
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gcs_subnetwork_name = "subnetwork" ,
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region = "us-central1" ,
@@ -125,7 +125,7 @@ workflow GvsQuickstartHailIntegration {
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input :
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go = GvsCreateVDS .done ,
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git_branch_or_tag = git_branch_or_tag ,
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- vds_path = GvsExtractAvroFilesForHail .vds_output_path ,
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+ vds_path = GvsExtractAvroFilesForHail .avro_path + "/gvs_export.vds" ,
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tieout_vcfs = GvsQuickstartVcfIntegration .output_vcfs ,
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tieout_vcf_indexes = GvsQuickstartVcfIntegration .output_vcf_indexes ,
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cloud_sdk_slim_docker = effective_cloud_sdk_slim_docker ,
@@ -137,7 +137,7 @@ workflow GvsQuickstartHailIntegration {
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Array [File ] output_vcf_indexes = GvsQuickstartVcfIntegration .output_vcf_indexes
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Float total_vcfs_size_mb = GvsQuickstartVcfIntegration .total_vcfs_size_mb
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File manifest = GvsQuickstartVcfIntegration .manifest
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- String vds_output_path = GvsExtractAvroFilesForHail .vds_output_path
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+ String vds_output_path = GvsExtractAvroFilesForHail .avro_path + "/gvs_export.vds"
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String recorded_git_hash = effective_git_hash
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Boolean done = true
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Boolean used_tighter_gcp_quotas = GvsQuickstartVcfIntegration .used_tighter_gcp_quotas
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