revdep

Author: bmaitner

revdep/README.md

@@ -1,18 +1,18 @@
 # Platform
 
-|field    |value                                 |
-|:--------|:-------------------------------------|
-|version  |R version 4.4.2 (2024-10-31 ucrt)     |
-|os       |Windows 11 x64 (build 22631)          |
-|system   |x86_64, mingw32                       |
-|ui       |RStudio                               |
-|language |(EN)                                  |
-|collate  |English_United States.utf8            |
-|ctype    |English_United States.utf8            |
-|tz       |America/New_York                      |
-|date     |2025-01-31                            |
-|rstudio  |2024.12.0+467 Kousa Dogwood (desktop) |
-|pandoc   |NA                                    |
+|field    |value                                                                              |
+|:--------|:----------------------------------------------------------------------------------|
+|version  |R version 4.4.2 (2024-10-31 ucrt)                                                  |
+|os       |Windows 11 x64 (build 22631)                                                       |
+|system   |x86_64, mingw32                                                                    |
+|ui       |RStudio                                                                            |
+|language |(EN)                                                                               |
+|collate  |English_United States.utf8                                                         |
+|ctype    |English_United States.utf8                                                         |
+|tz       |America/New_York                                                                   |
+|date     |2025-01-31                                                                         |
+|rstudio  |2024.12.0+467 Kousa Dogwood (desktop)                                              |
+|pandoc   |3.2 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) |
 
 # Dependencies
 

revdep/checks/GVS/new/GVS.Rcheck/GVS-Ex.Rout

@@ -159,7 +159,7 @@ Type 'q()' to quit R.
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.08 0 2.58 NA NA 
+Time elapsed:  0.07 0 3.33 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/GVS/new/GVS.Rcheck/GVS-Ex.pdf

@@ -29,5 +29,5 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-   0.28    0.04    1.01 
+   0.34    0.04    0.95 
 Ran 12/12 deferred expressions

revdep/checks/GVS/new/GVS.Rcheck/tests/testthat.Rout

@@ -159,7 +159,7 @@ Type 'q()' to quit R.
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.02 0 3.22 NA NA 
+Time elapsed:  0.06 0 3.24 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/GVS/old/GVS.Rcheck/GVS-Ex.Rout

@@ -29,5 +29,5 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-   0.14    0.10    1.06 
+   0.42    0.07    0.95 
 Ran 12/12 deferred expressions

revdep/checks/GVS/old/GVS.Rcheck/GVS-Ex.pdf

@@ -239,7 +239,7 @@ Type 'q()' to quit R.
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.07 0.07 2.23 NA NA 
+Time elapsed:  0.11 0.03 2.57 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/GVS/old/GVS.Rcheck/tests/testthat.Rout

@@ -29,5 +29,5 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-   0.51    0.10    1.04 
+   0.34    0.17    1.03 
 Ran 20/20 deferred expressions

revdep/checks/NSR/new/NSR.Rcheck/NSR-Ex.Rout

@@ -239,7 +239,7 @@ Type 'q()' to quit R.
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.02 0.01 2.4 NA NA 
+Time elapsed:  0.05 0.02 2.65 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/NSR/new/NSR.Rcheck/NSR-Ex.pdf

@@ -29,5 +29,5 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-   0.21    0.03    1.09 
+   0.09    0.03    1.03 
 Ran 20/20 deferred expressions

revdep/checks/NSR/new/NSR.Rcheck/tests/testthat.Rout

@@ -455,7 +455,7 @@ detaching 'package:sf', 'package:terra'
 
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  1 0.06 4.77 NA NA 
+Time elapsed:  1.29 0.04 4.66 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/NSR/old/NSR.Rcheck/NSR-Ex.Rout

@@ -29,4 +29,4 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-  16.01    1.68   77.48 
+  21.42    2.35   80.96 

revdep/checks/NSR/old/NSR.Rcheck/NSR-Ex.pdf

@@ -455,7 +455,7 @@ detaching 'package:sf', 'package:terra'
 
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  1.59 0.05 4.78 NA NA 
+Time elapsed:  1.33 0.16 4.46 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/NSR/old/NSR.Rcheck/tests/testthat.Rout

@@ -29,4 +29,4 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-  17.07    2.01   79.39 
+  20.00    2.35   75.42 

revdep/checks/S4DM/new/S4DM.Rcheck/S4DM-Ex.Rout

@@ -16720,7 +16720,7 @@ list()
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.25 0.03 1.65 NA NA 
+Time elapsed:  0.42 0.08 1.62 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/S4DM/new/S4DM.Rcheck/S4DM-Ex.pdf

@@ -100,4 +100,4 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-   0.92    0.14    9.17 
+   0.92    0.10    9.18 

revdep/checks/S4DM/new/S4DM.Rcheck/tests/testthat.Rout

@@ -16720,7 +16720,7 @@ list()
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.14 0 1.68 NA NA 
+Time elapsed:  0.51 0.06 1.67 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/S4DM/old/S4DM.Rcheck/S4DM-Ex.Rout

@@ -100,4 +100,4 @@ Type 'q()' to quit R.
 > 
 > proc.time()
    user  system elapsed 
-   0.79    0.07   10.48 
+   1.59    0.15   10.20 

revdep/checks/S4DM/old/S4DM.Rcheck/S4DM-Ex.pdf

@@ -746,7 +746,7 @@ List of 8
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.39 0.04 2.44 NA NA 
+Time elapsed:  0.75 0.03 2.41 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/S4DM/old/S4DM.Rcheck/tests/testthat.Rout

@@ -746,7 +746,7 @@ List of 8
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.45 0.06 3.35 NA NA 
+Time elapsed:  1.2 0.09 3.01 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/occCite/new/occCite.Rcheck/occCite-Ex.Rout

@@ -888,7 +888,7 @@ Transferring extent user-defined polygon buffered by 1 degrees.
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.25 0.08 1.18 NA NA 
+Time elapsed:  0.38 0 1.21 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/occCite/new/occCite.Rcheck/occCite-Ex.pdf

@@ -888,7 +888,7 @@ Transferring extent user-defined polygon buffered by 1 degrees.
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  0.32 0.07 1.23 NA NA 
+Time elapsed:  0.18 0 1.2 NA NA 
 > grDevices::dev.off()
 null device 
           1 

revdep/checks/occCite/new/occCite.Rcheck/tests/testthat.Rout

@@ -4,7 +4,7 @@ Title: Tools for Accessing the Botanical Information and Ecology
 Version: 1.2.7
 Authors@R: person("Brian", "Maitner", email = "bmaitner@gmail.com", role = c("aut", "cre"))
 Description: Provides Tools for Accessing the Botanical Information and Ecology Network Database.  The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <https://bien.nceas.ucsb.edu/bien/> for more Information).  This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.
-Depends: R (>= 3.2.1), RPostgreSQL
+Depends: R (>= 4.1.0), RPostgreSQL
 License: MIT + file LICENSE
 Imports: DBI, ape, sf, terra, doParallel, parallel, foreach
 Suggests: knitr, rmarkdown, testthat, maps
@@ -14,7 +14,7 @@ Encoding: UTF-8
 RemoteType: local
 RemoteUrl: C:\Users\bmaitner\Desktop\current_projects\RBIEN
 NeedsCompilation: no
-Packaged: 2025-01-31 15:58:33 UTC; bmaitner
+Packaged: 2025-01-31 20:57:03 UTC; bmaitner
 Author: Brian Maitner [aut, cre]
 Maintainer: Brian Maitner <bmaitner@gmail.com>
-Built: R 4.4.2; ; 2025-01-31 15:58:34 UTC; windows
+Built: R 4.4.2; ; 2025-01-31 20:57:03 UTC; windows

revdep/checks/occCite/old/occCite.Rcheck/occCite-Ex.Rout

@@ -16,6 +16,7 @@
 * Removed ORDER BY statements to optimize query speed
 * Updated code to download in batches, providing at least some measure of progress update (should also help with some timeout issues on large queries)
 * Added an internal function BIEN_metadata_data_dictionaries to provide metadata about some of the fields.
+* Updated dependency to include R >= 4.1.0, since the code uses |>
 
 # BIEN 1.2.6
 ===============