Release v0.7.2 (#49)

* Install matplotlib

* Specify python3

* Don't use isintalled in BioMASS.jl

* Bump version to 0.7.2

* Update workflow

Author: Hiroaki Imoto

.github/workflows/Documentation.yml

@@ -11,6 +11,9 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
+      - name: Install Python dependencies
+        run: if [ "$RUNNER_OS" = "Linux" ]; then sudo apt-get install -y python3-numpy python3-scipy python3-matplotlib; fi
+        shell: bash
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@latest
         with:

.github/workflows/ci.yml

@@ -17,6 +17,9 @@ jobs:
         arch:
           - x64
     steps:
+      - name: Install Python dependencies
+        run: if [ "$RUNNER_OS" = "Linux" ]; then sudo apt-get install -y python3-numpy python3-scipy python3-matplotlib; fi
+        shell: bash
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:

Project.toml

@@ -1,7 +1,7 @@
 name = "BioMASS"
 uuid = "324734c7-f323-4536-9335-775d9be9d101"
 authors = ["Hiroaki Imoto <himoto@protein.osaka-u.ac.jp>"]
-version = "0.7.1"
+version = "0.7.2"
 
 [deps]
 CMAEvolutionStrategy = "8d3b24bd-414e-49e0-94fb-163cc3a3e411"

src/BioMASS.jl

@@ -88,16 +88,12 @@ function isinstalled(pymodule::String)::Bool
     end
 end
 
-if isinstalled("numpy") && isinstalled("scipy")
-    include("pyproject.jl")
-end
+include("pyproject.jl")
 include("optimize.jl")
 include("estimation/initial_population.jl")
 include("estimation/converging.jl")
 include("estimation/local_search.jl")
 include("estimation/ga.jl")
-if isinstalled("matplotlib")
-    include("visulalize.jl")
-end
+include("visulalize.jl")
 include("continuation.jl")
 end # module