Skip to content
This repository was archived by the owner on Feb 4, 2018. It is now read-only.
This repository was archived by the owner on Feb 4, 2018. It is now read-only.

Building environment.yml repo spuriously succeeds #13

@ElDeveloper

Description

@ElDeveloper

I'm trying to build a binder for https://github.com/ElDeveloper/dogs and everything seems to be working just fine, the image is built and I can access the server. However, when I go there some of the dependencies are missing. After looking at the log file, it seems like R is missing from the build and one of my pip dependencies fail, thus leading to all the dependencies listed under pip to not be installed:

  Downloading qiime-default-reference-0.1.2.tar.gz (35.2MB)
Collecting qtconsole==4.2.1
  Downloading qtconsole-4.2.1-py2.py3-none-any.whl (104kB)
Collecting requests==2.7.0
  Downloading requests-2.7.0-py2.py3-none-any.whl (470kB)
Collecting rpy2==2.7.4
  Downloading rpy2-2.7.4.tar.gz (177kB)
    Error: Tried to guess R's HOME but no command (R) in the PATH.    
    ----------------------------------------

    Complete output from command python setup.py egg_info:
�[91mCommand "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-BONcAQ/rpy2/�[0m

See the log file here.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions