From 54a09b71df0191a057227ea07bcb53ad7bec3fee Mon Sep 17 00:00:00 2001 From: Jermiah Date: Wed, 15 Jan 2025 15:26:09 +0000 Subject: [PATCH] fix: update toml to fix deprecated "depends_on" key --- pixi.lock | 454 +------------------------------------------------ pyproject.toml | 6 +- 2 files changed, 5 insertions(+), 455 deletions(-) diff --git a/pixi.lock b/pixi.lock index 6b7b93d..4a3ffc1 100644 --- a/pixi.lock +++ b/pixi.lock @@ -3498,8 +3498,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 sha256: fe51de6107f9edc7aa4f786a70f4a883943bc9d39b3bb7307c04c41410990726 md5: d7c89558ba9fa0495403155b64376d81 - arch: x86_64 - platform: linux license: None purls: [] size: 2562 @@ -3513,8 +3511,6 @@ packages: - libgomp >=7.5.0 constrains: - openmp_impl 9999 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: [] @@ -3801,8 +3797,6 @@ packages: - libgcc >=13 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: @@ -3817,8 +3811,6 @@ packages: - cffi >=1.0.1 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: @@ -3834,8 +3826,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: @@ -3852,8 +3842,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: @@ -4051,8 +4039,6 @@ packages: - python_abi 3.12.* *_cp312 constrains: - libbrotlicommon 1.1.0 hb9d3cd8_2 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: @@ -4069,8 +4055,6 @@ packages: - python_abi 3.12.* *_cp312 constrains: - libbrotlicommon 1.1.0 h00291cd_2 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: @@ -4088,8 +4072,6 @@ packages: - python_abi 3.12.* *_cp312 constrains: - libbrotlicommon 1.1.0 hd74edd7_2 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: @@ -4107,8 +4089,6 @@ packages: - vc14_runtime >=14.29.30139 constrains: - libbrotlicommon 1.1.0 h2466b09_2 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: @@ -4121,8 +4101,6 @@ packages: depends: - __glibc >=2.17,<3.0.a0 - libgcc-ng >=12 - arch: x86_64 - platform: linux license: bzip2-1.0.6 license_family: BSD purls: [] @@ -4133,8 +4111,6 @@ packages: md5: 7ed4301d437b59045be7e051a0308211 depends: - __osx >=10.13 - arch: x86_64 - platform: osx license: bzip2-1.0.6 license_family: BSD purls: [] @@ -4145,8 +4121,6 @@ packages: md5: fc6948412dbbbe9a4c9ddbbcfe0a79ab depends: - __osx >=11.0 - arch: arm64 - platform: osx license: bzip2-1.0.6 license_family: BSD purls: [] @@ -4159,8 +4133,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: bzip2-1.0.6 license_family: BSD purls: [] @@ -4169,8 +4141,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.12.14-hbcca054_0.conda sha256: 1afd7274cbc9a334d6d0bc62fa760acc7afdaceb0b91a8df370ec01fd75dc7dd md5: 720523eb0d6a9b0f6120c16b2aa4e7de - arch: x86_64 - platform: linux license: ISC purls: [] size: 157088 @@ -4178,8 +4148,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.12.14-h8857fd0_0.conda sha256: ddaafdcd1b8ace6ffeea22b6824ca9db8a64cf0a2652a11d7554ece54935fa06 md5: b7b887091c99ed2e74845e75e9128410 - arch: x86_64 - platform: osx license: ISC purls: [] size: 156925 @@ -4187,8 +4155,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/osx-arm64/ca-certificates-2024.12.14-hf0a4a13_0.conda sha256: 256be633fd0882ccc1a7a32bc278547e1703f85082c0789a87a603ee3ab8fb82 md5: 7cb381a6783d91902638e4ed1ebd478e - arch: arm64 - platform: osx license: ISC purls: [] size: 157091 @@ -4196,8 +4162,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/win-64/ca-certificates-2024.12.14-h56e8100_0.conda sha256: 424d82db36cd26234bc4772426170efd60e888c2aed0099a257a95e131683a5e md5: cb2eaeb88549ddb27af533eccf9a45c1 - arch: x86_64 - platform: win license: ISC purls: [] size: 157422 @@ -4244,8 +4208,6 @@ packages: - pycparser - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: @@ -4261,8 +4223,6 @@ packages: - pycparser - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: @@ -4279,8 +4239,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: @@ -4297,8 +4255,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: @@ -4697,8 +4653,6 @@ packages: - python >=3.10,<3.11.0a0 - python_abi 3.10.* *_cp310 - tomli - arch: x86_64 - platform: linux license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4713,8 +4667,6 @@ packages: - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - tomli - arch: x86_64 - platform: linux license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4729,8 +4681,6 @@ packages: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - tomli - arch: x86_64 - platform: linux license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4744,8 +4694,6 @@ packages: - python >=3.10,<3.11.0a0 - python_abi 3.10.* *_cp310 - tomli - arch: x86_64 - platform: osx license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4759,8 +4707,6 @@ packages: - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - tomli - arch: x86_64 - platform: osx license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4774,8 +4720,6 @@ packages: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - tomli - arch: x86_64 - platform: osx license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4790,8 +4734,6 @@ packages: - python >=3.10,<3.11.0a0 *_cpython - python_abi 3.10.* *_cp310 - tomli - arch: arm64 - platform: osx license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4806,8 +4748,6 @@ packages: - python >=3.11,<3.12.0a0 *_cpython - python_abi 3.11.* *_cp311 - tomli - arch: arm64 - platform: osx license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4822,8 +4762,6 @@ packages: - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - tomli - arch: arm64 - platform: osx license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4839,8 +4777,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4856,8 +4792,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4873,8 +4807,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 purls: - pkg:pypi/coverage?source=hash-mapping @@ -4903,8 +4835,6 @@ packages: - python_abi 3.12.* *_cp312 constrains: - __glibc >=2.17 - arch: x86_64 - platform: linux license: Apache-2.0 AND BSD-3-Clause AND PSF-2.0 AND MIT license_family: BSD purls: @@ -4931,8 +4861,6 @@ packages: - expat >=2.4.2,<3.0a0 - libgcc-ng >=9.4.0 - libglib >=2.70.2,<3.0a0 - arch: x86_64 - platform: linux license: GPL-2.0-or-later license_family: GPL purls: [] @@ -4947,8 +4875,6 @@ packages: - libstdcxx >=13 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: @@ -4963,8 +4889,6 @@ packages: - libcxx >=18 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: @@ -4980,8 +4904,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: @@ -4997,8 +4919,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: @@ -5121,8 +5041,6 @@ packages: - __glibc >=2.17,<3.0.a0 - libexpat 2.6.4 h5888daf_0 - libgcc >=13 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -6400,8 +6318,6 @@ packages: depends: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: @@ -6414,8 +6330,6 @@ packages: depends: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: BSD-3-Clause license_family: BSD purls: @@ -6429,8 +6343,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: BSD-3-Clause license_family: BSD purls: @@ -6443,8 +6355,6 @@ packages: depends: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: @@ -6738,8 +6648,6 @@ packages: md5: 30186d27e2c9fa62b45fb1476b7200e3 depends: - 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libzlib >=1.2.13,<2.0.0a0 - arch: x86_64 - platform: osx license: TCL license_family: BSD purls: [] @@ -14956,8 +14590,6 @@ packages: md5: b50a57ba89c32b62428b71a875291c9b depends: - libzlib >=1.2.13,<2.0.0a0 - arch: arm64 - platform: osx license: TCL license_family: BSD purls: [] @@ -14970,8 +14602,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: TCL license_family: BSD purls: [] @@ -15029,8 +14659,6 @@ packages: - libgcc >=13 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: @@ -15044,8 +14672,6 @@ packages: - __osx >=10.13 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: @@ -15060,8 +14686,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: @@ -15077,8 +14701,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: @@ -15188,8 +14810,6 @@ packages: md5: 6797b005cd0f439c4c5c9ac565783700 constrains: - vs2015_runtime >=14.29.30037 - arch: x86_64 - platform: win license: LicenseRef-MicrosoftWindowsSDK10 purls: [] size: 559710 @@ -15204,8 +14824,6 @@ packages: - libstdcxx >=13 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: @@ -15221,8 +14839,6 @@ packages: - libcxx >=17 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: @@ -15239,8 +14855,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: @@ -15257,8 +14871,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: @@ -15312,8 +14924,6 @@ packages: - libstdcxx >=13 constrains: - __glibc >=2.17 - arch: x86_64 - platform: linux license: Apache-2.0 OR MIT purls: [] size: 10629639 @@ -15326,8 +14936,6 @@ packages: - libcxx >=18 constrains: - __osx >=10.13 - arch: x86_64 - platform: osx license: Apache-2.0 OR MIT purls: [] size: 10266392 @@ -15340,8 +14948,6 @@ packages: - libcxx >=18 constrains: - __osx >=11.0 - arch: arm64 - platform: osx license: Apache-2.0 OR MIT purls: [] size: 10310622 @@ -15353,8 +14959,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 OR MIT purls: [] size: 11505540 @@ -15364,8 +14968,6 @@ packages: md5: 7c10ec3158d1eb4ddff7007c9101adb0 depends: - vc14_runtime >=14.38.33135 - arch: x86_64 - platform: win track_features: - vc14 license: BSD-3-Clause @@ -15380,8 +14982,6 @@ packages: - ucrt >=10.0.20348.0 constrains: - vs2015_runtime 14.42.34433.* *_23 - arch: x86_64 - platform: win license: LicenseRef-MicrosoftVisualCpp2015-2022Runtime license_family: Proprietary purls: [] @@ -15416,8 +15016,6 @@ packages: md5: 5c176975ca2b8366abad3c97b3cd1e83 depends: - vc14_runtime >=14.42.34433 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: [] @@ -15430,8 +15028,6 @@ packages: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - pyyaml >=3.10 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: APACHE purls: @@ -15446,8 +15042,6 @@ packages: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - pyyaml >=3.10 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: APACHE purls: @@ -15463,8 +15057,6 @@ packages: - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - pyyaml >=3.10 - arch: arm64 - platform: osx license: Apache-2.0 license_family: APACHE purls: @@ -15478,8 +15070,6 @@ packages: - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - pyyaml >=3.10 - arch: x86_64 - platform: win license: Apache-2.0 license_family: APACHE purls: @@ -15575,8 +15165,6 @@ packages: md5: 4cb3ad778ec2d5a7acbdf254eb1c42ae depends: - libgcc-ng >=9.4.0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -15585,8 +15173,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2 sha256: 5301417e2c8dea45b401ffee8df3957d2447d4ce80c83c5ff151fc6bfe1c4148 md5: d7e08fcf8259d742156188e8762b4d20 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -15595,8 +15181,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/osx-arm64/yaml-0.2.5-h3422bc3_2.tar.bz2 sha256: 93181a04ba8cfecfdfb162fc958436d868cc37db504c58078eab4c1a3e57fbb7 md5: 4bb3f014845110883a3c5ee811fd84b4 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -15608,8 +15192,6 @@ packages: depends: - vc >=14.1,<15.0a0 - vs2015_runtime >=14.16.27012 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -15734,8 +15316,6 @@ packages: - propcache >=0.2.1 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: @@ -15752,8 +15332,6 @@ packages: - propcache >=0.2.1 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: @@ -15771,8 +15349,6 @@ packages: - python >=3.12,<3.13.0a0 - python >=3.12,<3.13.0a0 *_cpython - python_abi 3.12.* *_cp312 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: @@ -15791,8 +15367,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: @@ -15808,8 +15382,6 @@ packages: - libgcc >=13 - libsodium >=1.0.20,<1.0.21.0a0 - libstdcxx >=13 - arch: x86_64 - platform: linux license: MPL-2.0 license_family: MOZILLA purls: [] @@ -15823,8 +15395,6 @@ packages: - krb5 >=1.21.3,<1.22.0a0 - libcxx >=18 - libsodium >=1.0.20,<1.0.21.0a0 - arch: x86_64 - platform: osx license: MPL-2.0 license_family: MOZILLA purls: [] @@ -15838,8 +15408,6 @@ packages: - krb5 >=1.21.3,<1.22.0a0 - libcxx >=18 - libsodium >=1.0.20,<1.0.21.0a0 - arch: arm64 - platform: osx license: MPL-2.0 license_family: MOZILLA purls: [] @@ -15854,8 +15422,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: MPL-2.0 license_family: MOZILLA purls: [] @@ -15883,8 +15449,6 @@ packages: - python_abi 3.12.* *_cp312 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: @@ -15901,8 +15465,6 @@ packages: - python_abi 3.12.* *_cp312 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: osx license: BSD-3-Clause license_family: BSD purls: @@ -15920,8 +15482,6 @@ packages: - python_abi 3.12.* *_cp312 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: arm64 - platform: osx license: BSD-3-Clause license_family: BSD purls: @@ -15940,8 +15500,6 @@ packages: - vc14_runtime >=14.29.30139 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: @@ -15955,8 +15513,6 @@ packages: - libgcc-ng >=12 - libstdcxx-ng >=12 - libzlib >=1.2.13,<2.0.0a0 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: [] @@ -15968,8 +15524,6 @@ packages: depends: - __osx >=10.9 - libzlib >=1.2.13,<2.0.0a0 - arch: x86_64 - platform: osx license: BSD-3-Clause license_family: BSD purls: [] @@ -15981,8 +15535,6 @@ packages: depends: - __osx >=11.0 - libzlib >=1.2.13,<2.0.0a0 - arch: arm64 - platform: osx license: BSD-3-Clause license_family: BSD purls: [] @@ -15996,8 +15548,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: [] diff --git a/pyproject.toml b/pyproject.toml index 98f9fc8..3cc844e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,11 +11,11 @@ dependencies = [ "matplotlib>=3.9.2,<4", "med-imagetools>=1.9.2", "pydicom>=2.3.1", - "pyradiomics-bhklab>=3.1.4,<4", + "pyradiomics-bhklab>=3.1.4,<4", "orcestra-downloader>=0.9.0,<1", "numpy==1.26.4.*", "seaborn>=0.13.2,<0.14", - "pandas>=2.2.3,<3" + "pandas>=2.2.3,<3", ] requires-python = ">=3.10, <3.13" @@ -135,7 +135,7 @@ inputs = ["src", "config/ruff.toml"] description = "Run ruff formatter, use `--diff` to see changes only" [tool.pixi.feature.style.tasks.qc] -depends_on = ["_lint", "_format"] +depends-on = ["_lint", "_format"] description = "Run all quality control tasks" #################################### RELEASE & BUILD ###############################################