Merge pull request #632 in DAT/ipr-client from release/v5.0.3 to master

* commit '09c8c1ec69ec2aef349df5759ba1b9c63896b8aa':
  5.0.3
  Fix microbial update endpoint

Author: Anna Davies

app/views/ReportView/components/GenomicSummary/index.jsx

@@ -350,7 +350,11 @@ const GenomicSummary = (props) => {
     }
 
     if (newMicrobialData) {
-      apiCalls.push(api.put(`/reports/${report.ident}/microbial`, newMicrobialData));
+      if (microbialData && microbialData.length) {
+        apiCalls.push(api.put(`/reports/${report.ident}/summary/microbial/${microbialData[0].ident}`, newMicrobialData));
+      } else {
+        apiCalls.push(api.post(`/reports/${report.ident}/summary/microbial`, newMicrobialData));
+      }
       setMicrobialData(newMicrobialData);
     } else {
       apiCalls.push({ request: () => null });
@@ -378,8 +382,8 @@ const GenomicSummary = (props) => {
     }
 
     let microbialUpdateData;
-    if (newMicrobialData && newMicrobialData.length) {
-      microbialUpdateData = newMicrobialData[0].species;
+    if (newMicrobialData) {
+      microbialUpdateData = newMicrobialData.species;
     } else if (microbialData && microbialData.length) {
       microbialUpdateData = microbialData[0].species;
     } else {
@@ -455,7 +459,7 @@ const GenomicSummary = (props) => {
         value: null,
       },
     ]);
-  }, [report, isSigned, history, microbialData, primaryBurdenData, print, setReport, signatureData]);
+  }, [isSigned, microbialData, primaryBurdenData, report,  print, signatureData, primaryComparator, setReport, history]);
 
   return (
     <div className="genomic-summary">

package-lock.json

@@ -1,7 +1,7 @@
 {
   "private": true,
   "name": "ipr-client",
-  "version": "5.0.2",
+  "version": "5.0.3",
   "keywords": [],
   "license": "GPL-3.0",
   "sideEffects": false,