Added CMake building, CPack packaging and Doxygen documenting.

The repo was reorganized a bit.

Author: KOLANICH

.gitmodules

@@ -0,0 +1,17 @@
+[submodule "cmake/thirdParty/Boilerplate"]
+	path = cmake/thirdParty/Boilerplate
+	url = https://github.com/KOLANICH-libs/Boilerplate.cmake
+	branch = master
+	shallow = true
+
+[submodule "cmake/thirdParty/DoxygenUtils"]
+	path = cmake/thirdParty/DoxygenUtils
+	url = https://github.com/KOLANICH-libs/DoxygenUtils.cmake
+	branch = master
+	shallow = true
+
+[submodule "cmake/thirdParty/DetectDependentHeaders"]
+	path = cmake/thirdParty/DetectDependentHeaders
+	url = https://github.com/KOLANICH-libs/DetectDependentHeaders.cmake
+	branch = master
+	shallow = true

C/CMakeLists.txt

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+add_subdirectory("include")
+
+set(C_SUBLIBS "knetfile;bgzf;kalloc;keigen;kexpr;khmm;kmath;knhx;kson;kstring;ksw;kthread;kurl;kopen;ksa")  # order matters!
+
+foreach(C_SUBLIB ${C_SUBLIBS})
+	add_subdirectory("${C_SUBLIB}")
+endforeach()
+
+pass_through_cpack_vars()

C/bgzf/CMakeLists.txt

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+buildAndPackageLib("bzgf"
+	COMPONENT "bzgf"
+	DESCRIPTION "${PROJECT_DESCRIPTION}\n\nSomething related to compression."
+	CMAKE_EXPORT_NAMESPACE "${PROJECT_NAME}"
+	PUBLIC_INCLUDES "${CMAKE_CURRENT_LIST_DIR}"
+	INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_INCLUDEDIR}/${PROJECT_NAME}"
+)
+
+option(BGZF_WITH_CACHE "Enable caching in bzgf" ON)
+if(BGZF_WITH_CACHE)
+	target_compile_definitions(bzgf PRIVATE "-DBGZF_CACHE") #khash is header-only
+	target_link_libraries(bzgf PRIVATE "${PROJECT_NAME}")
+endif()
+
+option(BGZF_WITH_KNETFILE "Use knetfile in bzgf" OFF)
+if(BGZF_WITH_KNETFILE)
+	target_compile_definitions(bzgf PRIVATE "-D_USE_KNETFILE")
+	target_link_libraries(bzgf PRIVATE knetfile)
+	set(CPACK_COMPONENT_BGZF_DEPENDS "${CPACK_COMPONENT_BGZF_DEPENDS};knetfile")
+
+	list(APPEND CPACK_DEBIAN_BZGF_PACKAGE_DEPENDS "${CPACK_DEBIAN_KNETFILE_PACKAGE_NAME}")
+	string(REPLACE ";" ", " CPACK_DEBIAN_BZGF_PACKAGE_DEPENDS "${CPACK_DEBIAN_BZGF_PACKAGE_DEPENDS}")
+	set(CPACK_DEBIAN_BZGF_PACKAGE_DEPENDS "${CPACK_DEBIAN_BZGF_PACKAGE_DEPENDS}" PARENT_SCOPE)
+
+	list(APPEND CPACK_RPM_BZGF_PACKAGE_DEPENDS "${CPACK_RPM_KNETFILE_PACKAGE_NAME}")
+	string(REPLACE ";" ", " CPACK_RPM_BZGF_PACKAGE_DEPENDS "${CPACK_RPM_BZGF_PACKAGE_DEPENDS}")
+	set(CPACK_RPM_BZGF_PACKAGE_DEPENDS "${CPACK_RPM_BZGF_PACKAGE_DEPENDS}" PARENT_SCOPE)
+
+	pass_through_cpack_vars()
+endif()

bgzf.c renamed to C/bgzf/bgzf.c

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+buildAndPackageLib("${PROJECT_NAME}"
+	COMPONENT "headers"
+	DESCRIPTION "${PROJECT_DESCRIPTION}\n\nHeader-only libraries"
+	CMAKE_EXPORT_NAMESPACE "${PROJECT_NAME}"
+	PUBLIC_INCLUDES "${CMAKE_CURRENT_LIST_DIR}"
+	INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_INCLUDEDIR}/${PROJECT_NAME}"
+)