reproject compilation fails on Fedora 39 #813
Description
I'm trying to reinstall ccdproc after upgrading to Fedora 39. Worked fine on 38.
My astropy is 5.3.2, numpy 1.26.2, cython 3.0.2. gcc 13.2.1
When I pip install ccdproc I get the following failure. Why is it not finding ob_digit??
building 'reproject.spherical_intersect._overlap' extension
creating build/temp.linux-x86_64-cpython-312
creating build/temp.linux-x86_64-cpython-312/reproject
creating build/temp.linux-x86_64-cpython-312/reproject/spherical_intersect
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fPIC -I/tmp/pip-build-env-2yq55aik/overlay/lib64/python3.12/site-packages/numpy/core/include -Ireproject/spherical_intersect -I/usr/include/python3.12 -c reproject/spherical_intersect/_overlap.c -o build/temp.linux-x86_64-cpython-312/reproject/spherical_intersect/_overlap.o -O2
In file included from /tmp/pip-build-env-2yq55aik/overlay/lib64/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /tmp/pip-build-env-2yq55aik/overlay/lib64/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /tmp/pip-build-env-2yq55aik/overlay/lib64/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from reproject/spherical_intersect/_overlap.c:746:
/tmp/pip-build-env-2yq55aik/overlay/lib64/python3.12/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__pyx_pf_9reproject_19spherical_intersect_8_overlap__reproject_slice_cython’:
reproject/spherical_intersect/_overlap.c:2225:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2225 | __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_np); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 30, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.12/dictobject.h:90,
from /usr/include/python3.12/Python.h:61,
from reproject/spherical_intersect/_overlap.c:6:
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:2237:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2237 | __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_np); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 30, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:2270:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2270 | __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 31, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:2282:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2282 | __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_np); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 31, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__pyx_pf_9reproject_19spherical_intersect_8_overlap_2_compute_overlap’:
reproject/spherical_intersect/_overlap.c:2790:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2790 | __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_np); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 58, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:2804:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2804 | __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_np); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 58, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:2837:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2837 | __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 59, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:2851:3: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
2851 | __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_np); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 59, __pyx_L1_error)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_get_tp_dict_version’:
reproject/spherical_intersect/_overlap.c:5413:5: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
5413 | return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
| ^~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_get_object_dict_version’:
reproject/spherical_intersect/_overlap.c:5425:5: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
5425 | return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
| ^~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_object_dict_version_matches’:
reproject/spherical_intersect/_overlap.c:5429:5: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
5429 | if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
| ^~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx__GetModuleGlobalName’:
reproject/spherical_intersect/_overlap.c:5446:5: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
5446 | __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_Raise’:
reproject/spherical_intersect/_overlap.c:5875:34: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’
5875 | PyObject* tmp_tb = tstate->curexc_traceback;
| ^~
reproject/spherical_intersect/_overlap.c:5878:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘curexc_traceback’
5878 | tstate->curexc_traceback = tb;
| ^~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_CLineForTraceback’:
reproject/spherical_intersect/_overlap.c:6030:9: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
6030 | __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c:6030:9: warning: ‘ma_version_tag’ is deprecated [-Wdeprecated-declarations]
6030 | __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/python3.12/cpython/dictobject.h:22:34: note: declared here
22 | Py_DEPRECATED(3.12) uint64_t ma_version_tag;
| ^~~~~~~~~~~~~~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_PyInt_As_int’:
reproject/spherical_intersect/_overlap.c:6621:53: error: ‘PyLongObject’ {aka ‘struct _longobject’} has no member named ‘ob_digit’
6621 | const digit* digits = ((PyLongObject*)x)->ob_digit;
| ^~
reproject/spherical_intersect/_overlap.c:6676:53: error: ‘PyLongObject’ {aka ‘struct _longobject’} has no member named ‘ob_digit’
6676 | const digit* digits = ((PyLongObject*)x)->ob_digit;
| ^~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_PyInt_As_long’:
reproject/spherical_intersect/_overlap.c:6893:53: error: ‘PyLongObject’ {aka ‘struct _longobject’} has no member named ‘ob_digit’
6893 | const digit* digits = ((PyLongObject*)x)->ob_digit;
| ^~
reproject/spherical_intersect/_overlap.c:6948:53: error: ‘PyLongObject’ {aka ‘struct _longobject’} has no member named ‘ob_digit’
6948 | const digit* digits = ((PyLongObject*)x)->ob_digit;
| ^~
reproject/spherical_intersect/_overlap.c: In function ‘__Pyx_PyIndex_AsSsize_t’:
reproject/spherical_intersect/_overlap.c:7399:45: error: ‘PyLongObject’ {aka ‘struct _longobject’} has no member named ‘ob_digit’
7399 | const digit* digits = ((PyLongObject*)b)->ob_digit;
| ^~
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for reproject
Failed to build reproject
ERROR: Could not build wheels for reproject, which is required to install pyproject.toml-based projects