fail to use pairwise comands #39
Description
Hi
I install intervene using conda and its working with plotting commands but not the pairwise. even with test its failing, please can you tell me whats wrong here? or bugs ??
intervene pairwise --test
Running Intervene with test data.
Performing a pairwise intersection analysis. Please wait...
Traceback (most recent call last):
File "/Users/rupeshk/miniconda3/envs/intervane/bin/intervene", line 4, in <module>
__import__('pkg_resources').run_script('intervene==0.5.8', 'intervene')
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/pkg_resources/__init__.py", line 665, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1463, in run_script
exec(code, namespace, namespace)
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/intervene-0.5.8-py3.6.egg-info/scripts/intervene", line 543, in <module>
main()
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/intervene-0.5.8-py3.6.egg-info/scripts/intervene", line 355, in main
pairwise.pairwise_intersection(options)
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/intervene/modules/pairwise/pairwise.py", line 454, in pairwise_intersection
matrix = pd.read_table(matrix_file,index_col=0, delim_whitespace=True)
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/pandas/io/parsers.py", line 755, in read_table
return read_csv(**locals())
File "/Users/rupeshk/miniconda3/envs/intervane/lib/python3.6/site-packages/pandas/io/parsers.py", line 625, in read_csv
"Specified a delimiter with both sep and "
ValueError: Specified a delimiter with both sep and delim_whitespace=True; you can only specify one.