continue work and add tests

Author: OriolAbril

arviz/stats/stats.py

@@ -754,6 +754,9 @@ def loo(data, pointwise=None, var_name=None, reff=None, scale=None, dask_kwargs=
     log_likelihood = _get_log_likelihood(inference_data, var_name=var_name)
     pointwise = rcParams["stats.ic_pointwise"] if pointwise is None else pointwise
 
+    if dask_kwargs is None:
+        dask_kwargs = {}
+
     log_likelihood = log_likelihood.stack(__sample__=("chain", "draw"))
     shape = log_likelihood.shape
     n_samples = shape[-1]
@@ -783,7 +786,9 @@ def loo(data, pointwise=None, var_name=None, reff=None, scale=None, dask_kwargs=
                 np.hstack([ess_p[v].values.flatten() for v in ess_p.data_vars]).mean() / n_samples
             )
 
-    log_weights, pareto_shape = psislw(-log_likelihood, reff, dask_kwargs=dask_kwargs)
+    psis_dask = dask_kwargs.copy()
+    psis_dask["output_dtypes"] = (float, float)
+    log_weights, pareto_shape = psislw(-log_likelihood, reff, dask_kwargs=psis_dask)
     log_weights += log_likelihood
 
     warn_mg = False
@@ -799,8 +804,10 @@ def loo(data, pointwise=None, var_name=None, reff=None, scale=None, dask_kwargs=
 
     ufunc_kwargs = {"n_dims": 1, "ravel": False}
     kwargs = {"input_core_dims": [["__sample__"]]}
+    logsumexp_dask = dask_kwargs.copy()
+    logsumexp_dask["output_dtypes"] = [float]
     loo_lppd_i = scale_value * _wrap_xarray_ufunc(
-        _logsumexp, log_weights, ufunc_kwargs=ufunc_kwargs, dask_kwargs=dask_kwargs, **kwargs
+        _logsumexp, log_weights, ufunc_kwargs=ufunc_kwargs, dask_kwargs=logsumexp_dask, **kwargs
     )
     loo_lppd = loo_lppd_i.sum().compute().item()
     loo_lppd_se = (n_data_points * loo_lppd_i.var().compute().item()) ** 0.5
@@ -811,7 +818,7 @@ def loo(data, pointwise=None, var_name=None, reff=None, scale=None, dask_kwargs=
             log_likelihood,
             func_kwargs={"b_inv": n_samples},
             ufunc_kwargs=ufunc_kwargs,
-            dask_kwargs=dask_kwargs,
+            dask_kwargs=logsumexp_dask,
             **kwargs,
         )
         .sum()
@@ -907,6 +914,8 @@ def psislw(log_weights, reff=1.0, dask_kwargs=None):
            ...: az.psislw(-log_likelihood, reff=0.8)
 
     """
+    if dask_kwargs is None:
+        dask_kwargs = {}
     if hasattr(log_weights, "__sample__"):
         n_samples = len(log_weights.__sample__)
         shape = [
@@ -920,10 +929,13 @@ def psislw(log_weights, reff=1.0, dask_kwargs=None):
     cutoffmin = np.log(np.finfo(float).tiny)  # pylint: disable=no-member, assignment-from-no-return
 
     # create output array with proper dimensions
-    out = np.empty_like(log_weights), np.empty(shape)
+    if dask_kwargs.get("dask", "forbidden") in {"allowed", "parallelized"}:
+        out = xr.zeros_like(log_weights).data, np.empty(shape)
+    else:
+        out = np.empty_like(log_weights), np.empty(shape)
 
     # define kwargs
-    func_kwargs = {"cutoff_ind": cutoff_ind, "cutoffmin": cutoffmin, "out": out}
+    func_kwargs = {"cutoff_ind": cutoff_ind, "cutoffmin": cutoffmin}
     ufunc_kwargs = {"n_dims": 1, "n_output": 2, "ravel": False, "check_shape": False}
     kwargs = {"input_core_dims": [["__sample__"]], "output_core_dims": [["__sample__"], []]}
     log_weights, pareto_shape = _wrap_xarray_ufunc(

arviz/tests/base_tests/test_stats_dask.py

@@ -0,0 +1,37 @@
+# pylint: disable=redefined-outer-name, no-member
+import pytest
+
+import numpy as np
+
+from ...data import load_arviz_data
+from ...stats import loo
+from ..helpers import multidim_models, importorskip  # pylint: disable=unused-import
+
+dask = importorskip("dask", reason="Dask specific tests")
+
+@pytest.fixture()
+def centered_eight():
+    centered_eight = load_arviz_data("centered_eight")
+    return centered_eight
+
+@pytest.mark.parametrize("multidim", (True, False))
+def test_loo(centered_eight, multidim_models, multidim):
+    """Test approximate leave one out criterion calculation"""
+    if multidim:
+        idata = multidim_models.model_1
+        idata.log_likelihood = idata.log_likelihood.chunk({"dim2": 3})
+    else:
+        idata = centered_eight
+        idata.log_likelihood = idata.log_likelihood.chunk({"school": 4})
+    assert loo(idata, dask_kwargs={"dask": "parallelized"}) is not None
+    loo_pointwise = loo(idata, pointwise=True, dask_kwargs={"dask": "parallelized"})
+    assert loo_pointwise is not None
+    assert "loo_i" in loo_pointwise
+    assert "pareto_k" in loo_pointwise
+    assert "scale" in loo_pointwise
+
+def test_compare_loo(centered_eight):
+    loo_ram = loo(centered_eight)
+    centered_eight.log_likelihood = centered_eight.log_likelihood.chunk({"school": 2})
+    loo_dask = loo(centered_eight, dask_kwargs={"dask": "parallelized"})
+    assert np.isclose(loo_ram["elpd"], loo_dask["eldp"])