libmamba issue

[pdichiaro]

ERROR: failed to solve: process "/bin/sh -c conda install -y -n env -c conda-forge -c bioconda --file requirements.txt --solver=libmamba" did not complete successfully: exit code: 1

requirements.txt

[arnaudceol]

Hi @pdichiaro , I tried the requirement file and got ```

[5/6] RUN micromamba install -y -n env -c conda-forge -c bioconda --file requirements.txt:
0.590 error libmamba dist_str anyio=4.6.2.post1=pyhd8ed1ab_0 did not split into a correct version info.
0.596 critical libmamba Invalid package filename.

(please include the error message in with the issues).

It looks like micromamba does not recognize the build string (what you see after the second '='). You may either remove the build string keeping only the versione, like here: 

This file may be used to create an environment using:

$ conda create --name --file

platform: linux-64

_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=2_gnu
_sysroot_linux-64_curr_repodata_hack=3
anyio=4.6.2.post1
argon2-cffi=23.1.0
argon2-cffi-bindings=21.2.0
arrow=1.3.0
asttokens=2.4.1
async-lru=2.0.4
attrs=24.2.0
babel=2.16.0
beautifulsoup4=4.12.3
binutils_impl_linux-64=2.43
bleach=6.2.0
brotli-python=1.1.0
bzip2=1.0.8
ca-certificates=2024.8.30
cached-property=1.5.2
cached_property=1.5.2
certifi=2024.8.30
cffi=1.17.1
charset-normalizer=3.4.0
comm=0.2.2
debugpy=1.8.8
decorator=5.1.1
defusedxml=0.7.1
entrypoints=0.4
exceptiongroup=1.2.2
executing=2.1.0
fqdn=1.5.1
gcc=13.2.0
gcc_impl_linux-64=13.2.0
h11=0.14.0
h2=4.1.0
hpack=4.0.0
httpcore=1.0.6
httpx=0.27.2
hyperframe=6.0.1
icu=75.1
idna=3.10
importlib-metadata=8.5.0
importlib_resources=6.4.5
ipykernel=6.29.5
ipython=8.29.0
isoduration=20.11.0
jedi=0.19.1
jinja2=3.1.4
json5=0.9.25
jsonpointer=3.0.0
jsonschema=4.23.0
jsonschema-specifications=2024.10.1
jsonschema-with-format-nongpl=4.23.0
jupyter-lsp=2.2.5
jupyter_client=8.6.3
jupyter_core=5.7.2
jupyter_events=0.10.0
jupyter_server=2.14.2
jupyter_server_terminals=0.5.3
jupyterlab=4.3.0
jupyterlab_pygments=0.3.0
jupyterlab_server=2.27.3
kernel-headers_linux-64=3.10.0
keyutils=1.6.1
krb5=1.21.3
ld_impl_linux-64=2.43
libedit=3.1.20191231
libexpat=2.6.4
libffi=3.4.2
libgcc=14.2.0
libgcc-devel_linux-64=13.2.0
libgcc-ng=14.2.0
libgomp=14.2.0
libiconv=1.17
libllvm19=19.1.3
libmpdec=4.0.0
libnsl=2.0.1
libsanitizer=13.2.0
libsodium=1.0.20
libsqlite=3.47.0
libstdcxx=14.2.0
libstdcxx-ng=14.2.0
libuuid=2.38.1
libuv=1.49.2
libxcrypt=4.4.36
libxml2=2.13.4
libzlib=1.3.1
llvm=19.1.3
markupsafe=3.0.2
matplotlib-inline=0.1.7
mistune=3.0.2
nbclient=0.10.0
nbconvert-core=7.16.4
nbformat=5.10.4
ncurses=6.5
nest-asyncio=1.6.0
nodejs=22.6.0
notebook-shim=0.2.4
openssl=3.3.2
overrides=7.7.0
packaging=24.1
pandocfilters=1.5.0
parso=0.8.4
pexpect=4.9.0
pickleshare=0.7.5
pip=24.3.1
pkgutil-resolve-name=1.3.10
platformdirs=4.3.6
prometheus_client=0.21.0
prompt-toolkit=3.0.48
psutil=6.1.0
ptyprocess=0.7.0
pure_eval=0.2.3
pycparser=2.22
pygments=2.18.0
pysocks=1.7.1
python=3.10.15
python-dateutil=2.9.0
python-fastjsonschema=2.20.0
python-json-logger=2.0.7
python_abi=3.10
pytz=2024.2
pyyaml=6.0.2
pyzmq=26.2.0
readline=8.2
referencing=0.35.1
requests=2.32.3
rfc3339-validator=0.1.4
rfc3986-validator=0.1.1
rpds-py=0.21.0
send2trash=1.8.3
setuptools=75.3.0
six=1.16.0
sniffio=1.3.1
soupsieve=2.5
stack_data=0.6.2
sysroot_linux-64=2.17
terminado=0.18.1
tinycss2=1.4.0
tk=8.6.13
tomli=2.0.2
tornado=6.4.1
traitlets=5.14.3
types-python-dateutil=2.9.0.20241003
typing-extensions=4.12.2
typing_extensions=4.12.2
typing_utils=0.1.0
tzdata=2024b
uri-template=1.3.0
urllib3=2.2.3
wcwidth=0.2.13
webcolors=24.8.0
webencodings=0.5.1
websocket-client=1.8.0
wheel=0.45.0
xz=5.2.6
yaml=0.2.5
zeromq=4.3.5
zipp=3.20.2
zlib=1.3.1
zstandard=0.23.0
zstd=1.5.6

Or try with mamba instead of micromamba (I have not tested it).