Skip to content

Broken MCR module on CI machines #1491

@AliceJoubert

Description

@AliceJoubert

Changing to clinica standalone set-up in CI with #1486 seems to have broken our non-regression tests : see https://github.com/aramis-lab/clinica/actions/workflows/test_non_regression_fast.yml

Before :

Loading clinica.all
  Loading requirement: clinica/ants/2.4.4 clinica/freesurfer/6.0.0
    clinica/fsl/6.0.5 clinica/itk/4.13.0 clinica/mrtrix3/3.0.3
    clinica/matlab/2017a clinica/spm12/r7771

Now :

Loading clinica_standalone.all
  Loading requirement: clinica/ants/2.4.4 clinica/freesurfer/6.0.0
    clinica/fsl/6.0.5 clinica/itk/4.13.0 clinica/mrtrix3/3.0.3 clinica/MCR/2018b
    clinica/spm12_standalone/2018b

It seems to have messed up with the paths :

antsRegistration: /mnt/third-party/MCR/2018b/v95/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by antsRegistration)

Metadata

Metadata

Labels

CIbugSomething isn't working

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions