Piper File List Diagrams

Clinical NLP Transformers

Cnlpt Negation

graph TD;
    subgraph "Complete PBJ Pipeline"
        A[Annotation Engine wrapper for the PbjStarter] --> B[Start 2nd Ctakes Java Pipeline]
        B --> C[Pip Pbj]
        C --> D[Start PBJ Python Pipeline]
        D --> DefaultTokenizerPipeline
        subgraph DefaultTokenizerPipeline[Text Processing]
            E[Discover Sections] --> F[Sentence Detector]
            F --> G[Identify Tokens]
        end
        DefaultTokenizerPipeline --> final
        subgraph final[Finalization]
            H[Create a dictionary lookup] --> I[Send jcas to Artemis Queue]
        end
end

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Degree-of and location-of relation, events,times, temporal relations, document creation time relations and core

(Default Advanced Pipeline)

graph TD;
    A[Clinical Pipeline with degree-of, location-of, events, times, temporal and event-doc creation time relations] --> B[Commands and parameters to create a default coreference processing sub-pipeline.]

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Pipeline with coreference resolution.

(Default Coref Pipeline)

graph TD;
    A[Commands and parameters to create a plaintext document processing pipeline with UMLS entity lookup. ] --> B[Commands and parameters to create a default coreference processing sub-pipeline.]

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Pipeline with coreference resolution.

(Default Coref Pipeline)