[CONTENT] [INFRASTRUCTURE] Another five papers added, some additions to infrastructure

Papers added:

PMID_10756006 #23
PMID_10925283 #22
PMID_11756174 #27
PMID_22314361 #75
PMID_24069285 #20

Papers withheld:

PMID_7964506 #4

Infrastructure

• Added "correct" step to correct ambiguous antigen species/gene naming
• Basic database summary generation
• A draft of algorithm to optimize VDJdb search scoring system

[CONTENT] [INFRASTRUCTURE] Five more papers & db management fixes/modifications

Papers added

PMID_12504586.txt
PMID_16326979.txt
PMID_24512815.txt
PMID_27252176.txt
PMID_7964506.txt

Minor

• Additional keyword for "direct validation" records, i.e. single cell affinity measurement & sequencing
• Also fixed a bug that resulted in single-chain records having a non-zero complex id in flattened database

[CONTENT] New papers and PDB complex data

Papers added:

PMID_12165524.txt
PMID_17082594.txt
PMID_19014475.txt
PMID_23267020.txt
PMID_24711416.txt

Also added 103 TCR:pMHC complexes with known structural data obtained by PDB database mining

[CONTENT] [INFRASTRUCTURE] A couple of papers and a slim version of database

Papers added:

PMID:21160049
PMID:18270323

[INFRASTRUCTURE] Update format

2016-05-02

Update on score calculation + cdr3fixer descr

[CONTENT] First release

Some stats

2115 records
135 complexes
1940 unique cdr3s
33 antigens
15 publications

References added

http://mediatum.ub.tum.de/doc/1136748
PMID:15589168
PMID:15596521
PMID:15849183
PMID:16148129
PMID:16237109
PMID:17287271
PMID:19017975
PMID:19776383
PMID:19864595
PMID:20139278
PMID:21555537
PMID:21562156
PMID:23028307
PMID:23637823
PMID:9862375