diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 03d61e2f..800ccd77 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_cite/__pycache__/util.cpython-311.pyc b/_cite/__pycache__/util.cpython-311.pyc index c540bab3..3693065e 100644 Binary files a/_cite/__pycache__/util.cpython-311.pyc and b/_cite/__pycache__/util.cpython-311.pyc differ diff --git a/_cite/plugins/__pycache__/orcid.cpython-311.pyc b/_cite/plugins/__pycache__/orcid.cpython-311.pyc index d38e5d36..a3f2fcb3 100644 Binary files a/_cite/plugins/__pycache__/orcid.cpython-311.pyc and b/_cite/plugins/__pycache__/orcid.cpython-311.pyc differ diff --git a/_cite/plugins/__pycache__/sources.cpython-311.pyc b/_cite/plugins/__pycache__/sources.cpython-311.pyc index bf899036..65fbb495 100644 Binary files a/_cite/plugins/__pycache__/sources.cpython-311.pyc and b/_cite/plugins/__pycache__/sources.cpython-311.pyc differ diff --git a/_data/citations.yaml b/_data/citations.yaml index 0e483e3a..53c5a549 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,5 +1,22 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY +- id: doi:10.1101/2025.06.19.660613 + title: Scalable data harmonization for single-cell image-based profiling with CytoTable + authors: + - Dave Bunten + - Jenna Tomkinson + - Erik Serrano + - Michael J. Lippincott + - Kenneth I. Brewer + - Vince Rubinetti + - Faisal Alquaddoomi + - Gregory P. Way + publisher: Cold Spring Harbor Laboratory + date: '2025-06-25' + link: https://doi.org/g9rfr3 + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1093/nar/gkad1082 title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\ \ genes\_and diseases across species" diff --git a/_data/members.yaml b/_data/members.yaml index 262523ae..832b8285 100644 --- a/_data/members.yaml +++ b/_data/members.yaml @@ -37,6 +37,7 @@ image: /images/team/others/Charlene.png url: badges: [Robotics] + status: alumnus - name: Nguyen NGUYEN name_jp: Nguyen Nguyen @@ -53,6 +54,8 @@ url: https://thuanbb.github.io/ badges: [CV, SLAM] date: 2022-09-01 + status: alumnus + alumnus_date: 2025-03-20 - name: Ardiansyah Al FAROUQ name_jp: Ardiansyah Al Farouq @@ -94,6 +97,8 @@ url: badges: [iSpace] date: 2023-09-01 + status: alumnus + alumnus_date: 2025-03-20 - name: Quang Tien DAM name_jp: Quang Tien Dam @@ -102,6 +107,8 @@ url: badges: [CV, Generative] date: 2023-09-01 + status: alumnus + alumnus_date: 2025-03-20 - name: Huy Hoang BUI name_jp: Huy Hoang Bui @@ -110,6 +117,8 @@ url: badges: [CV, SLAM] date: 2023-09-01 + status: alumnus + alumnus_date: 2025-03-20 - name: Yuki ENDO name_jp: 遠藤　優貴 @@ -247,13 +256,29 @@ badges: [CV] date: 2025-04-01 +- name: HAI DUONG TRAN + name_jp: HAI DUONG TRAN + role: m + image: /images/team/master/Duong.jpg + url: + badges: [Robotics, RL] + date: 2025-09-01 + +- name: Ansh Pandey + name_jp: Ansh Pandey + role: m + image: /images/team/dummy.png + url: + badges: + date: 2025-09-01 + # Bachelor students (b) - name: Sogo ARAKI name_jp: 荒木　颯吾 role: b image: /images/team/bachelor/araki.jpg url: - badges: [] + badges: [Robotics] date: 2022-04-01 - name: Izuru IPPITSU @@ -277,7 +302,7 @@ role: b image: /images/team/bachelor/katou.jpg url: - badges: [] + badges: [CaTARo] date: 2022-04-01 - name: Hibiki TAKAI @@ -285,7 +310,7 @@ role: b image: /images/team/bachelor/takai.jpg url: - badges: [] + badges: [Speech] date: 2022-04-01 - name: Haruki TSUKA @@ -301,7 +326,7 @@ role: b image: /images/team/bachelor/hirosawa.jpg url: - badges: [] + badges: [MAPF] date: 2022-04-01 - name: Aina FUJII @@ -309,7 +334,7 @@ role: b image: /images/team/bachelor/fujii.jpg url: - badges: [] + badges: [Robotics, R+iSpace] date: 2022-04-01 - name: Asahi FUMIMOTO @@ -317,7 +342,7 @@ role: b image: /images/team/bachelor/fumimoto.jpg url: - badges: [] + badges: [CV, SLAM] date: 2022-04-01 - name: Ai MITSUSHIMA @@ -349,5 +374,5 @@ role: b image: /images/team/bachelor/ryuu.png url: - badges: [] + badges: [Robotics] date: 2022-09-01 diff --git a/_includes/alumni_list.html b/_includes/alumni_list.html new file mode 100644 index 00000000..c3375e6f --- /dev/null +++ b/_includes/alumni_list.html @@ -0,0 +1,41 @@ +{%- assign alumni = site.data.members | where: "status", "alumnus" -%} +{%- assign alumni_by_year = alumni | group_by_exp: "item", "item.alumnus_date | date: '%Y'" | sort: "name" | reverse -%} + +{%- for year_group in alumni_by_year -%} + +

{{ year_group.name }}

+ {%- assign year_members = year_group.items -%} + +
+ {%- assign phds = year_members | where: "role", "phd" | sort: "name" -%} + {%- if phds.size > 0 -%} +

+ D: + {%- for member in phds -%} + {{ member.name }}{%- unless forloop.last -%}, {%- endunless -%} + {%- endfor -%} +

+ {%- endif -%} + + {%- assign masters = year_members | where: "role", "m" | sort: "name" -%} + {%- if masters.size > 0 -%} +

+ M: + {%- for member in masters -%} + {{ member.name }}{%- unless forloop.last -%}, {%- endunless -%} + {%- endfor -%} +

+ {%- endif -%} + + {%- assign bachelors = year_members | where: "role", "b" | sort: "name" -%} + {%- if bachelors.size > 0 -%} +

+ B: + {%- for member in bachelors -%} + {{ member.name }}{%- unless forloop.last -%}, {%- endunless -%} + {%- endfor -%} +

+ {%- endif -%} +
+ +{%- endfor -%} \ No newline at end of file diff --git a/_includes/list.html b/_includes/list.html index b51f4897..b3412389 100644 --- a/_includes/list.html +++ b/_includes/list.html @@ -2,9 +2,112 @@ {% assign data = site.data[include.data] | default: site[include.data] | default: emptyarray + | where_exp: "item", "item.status != 'alumnus'" | data_filter: include.filter %} +{% assign current_members = alldata | where_exp: "item", "item.status != 'alumnus'" %} +{% assign alumni = alldata | where: "status", "alumnus" %} +{% if cuurent_members.size > 0 %} + {% if include.year_asc %} + {% assign years = data + | group_by_exp: "d", "d.date | date: '%Y'" + | sort: "name" + %} + {% else %} + {% assign years = data + | group_by_exp: "d", "d.date | date: '%Y'" + | sort: "name" + | reverse + %} + {% endif %} + + {% for year in years %} + {% assign data = year.items %} + + {% if include.group_by_year and years.size > 1 %} + {{--}}

{{ year.name }}

+ {% assign data = data | sort: "date" | reverse %} + {% endif %} + + {% for d in data %} + {% assign style = d.style | default: include.style %} + {% if site.lang == "jp" %} + {% + include {{ include.component | append: ".html" }} + affiliation=d.affiliation + author=d.author + authors=d.authors + buttons=d.buttons + caption=d.caption + content=d.content + date=d.date + description=d.description_jp + excerpt=d.excerpt + height=d.height + icon=d.icon + id=d.id + image=d.image + last_modified_at=d.last_modified_at + link=d.link + lookup=d.lookup + name=d.name + name_jp=d.name_jp + publisher=d.publisher + repo=d.repo + role=d.role + slug=d.slug + style=style + subtitle=d.subtitle + tags=d.tags + text=d.text + title=d.title + tooltip=d.tooltip + type=d.type + url=d.url + width=d.width + badges=d.badges + %} + {% else %} + {% + include {{ include.component | append: ".html" }} + affiliation=d.affiliation + author=d.author + authors=d.authors + buttons=d.buttons + caption=d.caption + content=d.content + date=d.date + description=d.description + excerpt=d.excerpt + height=d.height + icon=d.icon + id=d.id + image=d.image + last_modified_at=d.last_modified_at + link=d.link + lookup=d.lookup + name=d.name + name_jp=d.name_jp + publisher=d.publisher + repo=d.repo + role=d.role + slug=d.slug + style=style + subtitle=d.subtitle + tags=d.tags + text=d.text + title=d.title + tooltip=d.tooltip + type=d.type + url=d.url + width=d.width + badges=d.badges + %} + {% endif %} + {% endfor %} + {% endfor %} +{% endif %} {% if include.year_asc %} {% assign years = data | group_by_exp: "d", "d.date | date: '%Y'" diff --git a/images/team/master/Duong.jpg b/images/team/master/Duong.jpg new file mode 100644 index 00000000..6807ed5b Binary files /dev/null and b/images/team/master/Duong.jpg differ diff --git a/team/index.md b/team/index.md index 9d83f18d..4dea5e45 100644 --- a/team/index.md +++ b/team/index.md @@ -32,6 +32,8 @@ nav: # Alumni +{% include alumni_list.html %} + {% include section.html %} {% capture content %}