Skip to content

TF and their target at gene level #32

@harimchun

Description

@harimchun

Hi, I am using RcisTarget for the GRN construction using SCENIC.

I wanted to investigate the Rcistarget database in order to know which genes are transcription factors and which genes are target genes of specific transcription factors.

With the downloaded 'feather' file, I cannot get the information I want to see.

If there's an additional file or anyway to get the TF and its target, how can I retrieve them?

The desired format would be like below

image

Thanks in advance.

Best,
Harim

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions