Skip to content

Error 136 #77

@22paulae

Description

@22paulae

I'm getting error 136 which I think is when trying to execute IntervalMiss:

slurm log final lines:

/projects/Aylward_Lab/Paula/nanopore/assemblers/wengan/bin/intervalmiss -d 7 --fst 0.1 -b 2937_wengan_allruns.minia.contigs.cov.txt -t 64 -s 2937_wengan_allruns.fms.sams.txt -c 2937_wengan_allruns.minia.contigs.fa -p 2937_wengan_allruns 2>2937_wengan_allruns.im.err >2937_wengan_allruns.im.log
/bin/sh: line 1: 186084 Floating point exception/projects/Aylward_Lab/Paula/nanopore/assemblers/wengan/bin/intervalmiss -d 7 --fst 0.1 -b 2937_wengan_allruns.minia.contigs.cov.txt -t 64 -s 2937_wengan_allruns.fms.sams.txt -c 2937_wengan_allruns.minia.contigs.fa -p 2937_wengan_allruns 2> 2937_wengan_allruns.im.err > 2937_wengan_allruns.im.log
make: *** [2937_wengan_allruns.MBC7.msplit.fa] Error 136

im.log file:

Sorting libs by insert size:
2937_wengan_allruns1.fm.sam 0 0 -2147483648 1
Scaling std: 0 -2147483648 -214748367
Lib: 0
Number of pair-ends : 0
Number of fragments : 0
Max allowed coverage 6
AVG 3 STD 1 CTG REP 3
=========== Checking Contigs =========
Minimum Base Coverage : 7
Minimum Contig length : 500

Thank you

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions