diff --git a/SQL/0000-00-00-schema.sql b/SQL/0000-00-00-schema.sql index deabd1eff4f..1d5a27d74b2 100644 --- a/SQL/0000-00-00-schema.sql +++ b/SQL/0000-00-00-schema.sql @@ -536,9 +536,10 @@ INSERT INTO `mri_scanner` (ID) VALUES (0); SET SQL_MODE=@OLD_SQL_MODE; CREATE TABLE `mri_scan_type` ( - `ID` int(11) unsigned NOT NULL auto_increment, - `Scan_type` text NOT NULL, - PRIMARY KEY (`ID`) + `MriScanTypeID` int(11) unsigned NOT NULL auto_increment, + `MriScanTypeName` VARCHAR(255) NOT NULL, + PRIMARY KEY (`MriScanTypeID`), + CONSTRAINT `UK_mri_scan_type_name` UNIQUE KEY `MriScanTypeName` (`MriScanTypeName`) ) ENGINE=InnoDB AUTO_INCREMENT=1001 DEFAULT CHARSET=utf8; INSERT INTO `mri_scan_type` VALUES @@ -576,7 +577,7 @@ CREATE TABLE `files` ( `EchoNumber` VARCHAR(20) DEFAULT NULL, `CoordinateSpace` varchar(255) default NULL, `OutputType` varchar(255) NOT NULL default '', - `AcquisitionProtocolID` int(10) unsigned default NULL, + `MriScanTypeID` int(10) unsigned default NULL, `FileType` varchar(12) default NULL, `InsertedByUserID` varchar(255) NOT NULL default '', `InsertTime` int(10) unsigned NOT NULL default 0, @@ -595,11 +596,11 @@ CREATE TABLE `files` ( KEY `sessionid` (`SessionID`), KEY `outputtype` (`OutputType`), KEY `filetype_outputtype` (`FileType`,`OutputType`), - KEY `AcquiIndex` (`AcquisitionProtocolID`,`SessionID`), + KEY `ScanIndex` (`MriScanTypeID`,`SessionID`), KEY `scannerid` (`ScannerID`), KEY `tarchivesource` (`TarchiveSource`), KEY `FK_files_HrrtArchiveID_1` (`HrrtArchiveID`), - CONSTRAINT `FK_files_2` FOREIGN KEY (`AcquisitionProtocolID`) REFERENCES `mri_scan_type` (`ID`), + CONSTRAINT `FK_files_2` FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`), CONSTRAINT `FK_files_1` FOREIGN KEY (`SessionID`) REFERENCES `session` (`ID`), CONSTRAINT `FK_files_3` FOREIGN KEY (`SourceFileID`) REFERENCES `files` (`FileID`), CONSTRAINT `FK_files_4` FOREIGN KEY (`ProcessProtocolID`) REFERENCES `mri_processing_protocol` (`ProcessProtocolID`), @@ -650,7 +651,7 @@ CREATE TABLE `mri_protocol` ( `ID` int(11) unsigned NOT NULL auto_increment, `CenterID` integer unsigned DEFAULT NULL, `ScannerID` int(10) unsigned DEFAULT NULL, - `Scan_type` int(10) unsigned NOT NULL default '0', + `MriScanTypeID` int(10) unsigned NOT NULL, `TR_min` DECIMAL(10,4) DEFAULT NULL, `TR_max` DECIMAL(10,4) DEFAULT NULL, `TE_min` DECIMAL(10,4) DEFAULT NULL, @@ -682,11 +683,12 @@ CREATE TABLE `mri_protocol` ( KEY `FK_mri_protocol_1` (`ScannerID`), CONSTRAINT `FK_mri_protocol_1` FOREIGN KEY (`ScannerID`) REFERENCES `mri_scanner` (`ID`), CONSTRAINT `FK_mri_protocol_2` FOREIGN KEY (`CenterID`) REFERENCES `psc` (`CenterID`), + CONSTRAINT `FK_mri_protocol_scan_type` FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`), CONSTRAINT `FK_mri_protocol_group_ID_1` FOREIGN KEY (`MriProtocolGroupID`) REFERENCES `mri_protocol_group` (`MriProtocolGroupID`) ) ENGINE=InnoDB AUTO_INCREMENT=1000 DEFAULT CHARSET=utf8; -INSERT INTO mri_protocol (CenterID,Scan_type,TR_min,TR_max,TE_min, +INSERT INTO mri_protocol (CenterID,MriScanTypeID,TR_min,TR_max,TE_min, TE_max,time_min,time_max,MriProtocolGroupID) VALUES (NULL,48,8000,14000,80,130,0,200,(SELECT MriProtocolGroupID FROM mri_protocol_group WHERE Name='Default MRI protocol group')), (NULL,40,1900,2700,10,30,0,500,(SELECT MriProtocolGroupID FROM mri_protocol_group WHERE Name='Default MRI protocol group')), @@ -694,15 +696,17 @@ INSERT INTO mri_protocol (CenterID,Scan_type,TR_min,TR_max,TE_min, (NULL,45,3000,9000,100,550,NULL,NULL,(SELECT MriProtocolGroupID FROM mri_protocol_group WHERE Name='Default MRI protocol group')); CREATE TABLE `mri_protocol_group_target` ( - `MriProtocolGroupTargetID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT, - `MriProtocolGroupID` INT(4) UNSIGNED NOT NULL, - `ProjectID` INT(10) UNSIGNED DEFAULT NULL, - `CohortID` INT(10) UNSIGNED DEFAULT NULL, - `Visit_label` VARCHAR(255) DEFAULT NULL, - PRIMARY KEY (`MriProtocolGroupTargetID`), - CONSTRAINT `FK_mri_protocol_group_target_1` FOREIGN KEY (`MriProtocolGroupID`) REFERENCES `mri_protocol_group` (`MriProtocolGroupID`), - CONSTRAINT `FK_mri_protocol_group_target_2` FOREIGN KEY (`ProjectID`) REFERENCES `Project` (`ProjectID`), - CONSTRAINT `FK_mri_protocol_group_target_3` FOREIGN KEY (`CohortID`) REFERENCES `cohort` (`CohortID`) + `MriProtocolGroupTargetID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT, + `MriProtocolGroupID` INT(4) UNSIGNED NOT NULL, + `ProjectID` INT(10) UNSIGNED DEFAULT NULL, + `CohortID` INT(10) UNSIGNED DEFAULT NULL, + `Visit_label` VARCHAR(255) DEFAULT NULL, + PRIMARY KEY (`MriProtocolGroupTargetID`), + CONSTRAINT `FK_mri_protocol_group_target_1` FOREIGN KEY (`MriProtocolGroupID`) REFERENCES `mri_protocol_group` (`MriProtocolGroupID`), + CONSTRAINT `FK_mri_protocol_group_target_2` FOREIGN KEY (`ProjectID`) REFERENCES `Project` (`ProjectID`), + CONSTRAINT `FK_mri_protocol_group_target_3` FOREIGN KEY (`CohortID`) REFERENCES `cohort` (`CohortID`), + CONSTRAINT `UK_mri_protocol_group_target` + UNIQUE (`ProjectID`, `CohortID`, `Visit_label`) ) ENGINE = InnoDB DEFAULT CHARSET=utf8mb4; INSERT INTO `mri_protocol_group_target` (`MriProtocolGroupID`, `ProjectID`, `CohortID`, `Visit_label`) @@ -760,7 +764,7 @@ INSERT INTO `mri_protocol_checks_group` (`Name`) VALUES('Default MRI protocol ch CREATE TABLE `mri_protocol_checks` ( `ID` int(11) NOT NULL AUTO_INCREMENT, - `Scan_type` int(11) unsigned DEFAULT NULL, + `MriScanTypeID` int(11) unsigned DEFAULT NULL, `Severity` enum('warning','exclude') DEFAULT NULL, `Header` varchar(255) DEFAULT NULL, `ValidMin` decimal(10,4) DEFAULT NULL, @@ -768,9 +772,9 @@ CREATE TABLE `mri_protocol_checks` ( `ValidRegex` varchar(255) DEFAULT NULL, `MriProtocolChecksGroupID` INT(4) UNSIGNED NOT NULL, PRIMARY KEY (`ID`), - KEY (`Scan_type`), - CONSTRAINT `FK_mriProtocolChecks_ScanType` - FOREIGN KEY (`Scan_type`) REFERENCES `mri_scan_type` (`ID`), + KEY (`MriScanTypeID`), + CONSTRAINT `FK_mri_protocol_checks_scan_type` + FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`), CONSTRAINT `FK_mri_protocol_checks_group_ID_1` FOREIGN KEY (`MriProtocolChecksGroupID`) REFERENCES `mri_protocol_checks_group` (`MriProtocolChecksGroupID`) ) ENGINE=InnoDB DEFAULT CHARSET=utf8; @@ -852,7 +856,7 @@ CREATE TABLE `bids_mri_scan_type_rel` ( `BIDSPhaseEncodingDirectionID` int(3) UNSIGNED DEFAULT NULL, PRIMARY KEY (`MRIScanTypeID`), KEY `FK_bids_mri_scan_type_rel` (`MRIScanTypeID`), - CONSTRAINT `FK_bids_mri_scan_type_rel` FOREIGN KEY (`MRIScanTypeID`) REFERENCES `mri_scan_type` (`ID`) ON DELETE CASCADE ON UPDATE CASCADE, + CONSTRAINT `FK_bids_mri_scan_type_rel` FOREIGN KEY (`MRIScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`) ON DELETE CASCADE ON UPDATE CASCADE, CONSTRAINT `FK_bids_category` FOREIGN KEY (`BIDSCategoryID`) REFERENCES `bids_category`(`BIDSCategoryID`), CONSTRAINT `FK_bids_scan_type_subcategory` FOREIGN KEY (`BIDSScanTypeSubCategoryID`) REFERENCES `bids_scan_type_subcategory` (`BIDSScanTypeSubCategoryID`), CONSTRAINT `FK_bids_scan_type` FOREIGN KEY (`BIDSScanTypeID`) REFERENCES `bids_scan_type` (`BIDSScanTypeID`), @@ -865,35 +869,35 @@ INSERT INTO bids_mri_scan_type_rel (MRIScanTypeID, BIDSCategoryID, BIDSScanTypeSubCategoryID, BIDSScanTypeID, BIDSEchoNumber) VALUES ( - (SELECT ID FROM mri_scan_type WHERE Scan_type = 'flair'), + (SELECT MriScanTypeID FROM mri_scan_type WHERE MriScanTypeName = 'flair'), (SELECT BIDSCategoryID FROM bids_category WHERE BIDSCategoryName='anat'), NULL, (SELECT BIDSScanTypeID FROM bids_scan_type WHERE BIDSSCanType='FLAIR'), NULL ), ( - (SELECT ID FROM mri_scan_type WHERE Scan_type = 'fMRI'), + (SELECT MriScanTypeID FROM mri_scan_type WHERE MriScanTypeName = 'fMRI'), (SELECT BIDSCategoryID FROM bids_category WHERE BIDSCategoryName='func'), (SELECT BIDSScanTypeSubCategoryID FROM bids_scan_type_subcategory WHERE BIDSScanTypeSubCategory='task-rest'), (SELECT BIDSScanTypeID FROM bids_scan_type WHERE BIDSSCanType='bold'), NULL ), ( - (SELECT ID FROM mri_scan_type WHERE Scan_type = 't1'), + (SELECT MriScanTypeID FROM mri_scan_type WHERE MriScanTypeName = 't1'), (SELECT BIDSCategoryID FROM bids_category WHERE BIDSCategoryName='anat'), NULL, (SELECT BIDSScanTypeID FROM bids_scan_type WHERE BIDSSCanType='T1w'), NULL ), ( - (SELECT ID FROM mri_scan_type WHERE Scan_type = 't2'), + (SELECT MriScanTypeID FROM mri_scan_type WHERE MriScanTypeName = 't2'), (SELECT BIDSCategoryID FROM bids_category WHERE BIDSCategoryName='anat'), NULL, (SELECT BIDSScanTypeID FROM bids_scan_type WHERE BIDSSCanType='T2w'), NULL ), ( - (SELECT ID FROM mri_scan_type WHERE Scan_type = 'dti'), + (SELECT MriScanTypeID FROM mri_scan_type WHERE MriScanTypeName = 'dti'), (SELECT BIDSCategoryID FROM bids_category WHERE BIDSCategoryName='dwi'), NULL, (SELECT BIDSScanTypeID FROM bids_scan_type WHERE BIDSSCanType='dwi'), @@ -975,7 +979,7 @@ CREATE TABLE `mri_violations_log` ( `CandID` int(6) DEFAULT NULL, `Visit_label` varchar(255) DEFAULT NULL, `CheckID` int(11) DEFAULT NULL, - `Scan_type` int(11) unsigned DEFAULT NULL, + `MriScanTypeID` int(11) unsigned DEFAULT NULL, `Severity` enum('warning','exclude') DEFAULT NULL, `Header` varchar(255) DEFAULT NULL, `Value` varchar(255) DEFAULT NULL, @@ -987,6 +991,8 @@ CREATE TABLE `mri_violations_log` ( PRIMARY KEY (`LogID`), CONSTRAINT `FK_tarchive_mriViolationsLog_1` FOREIGN KEY (`TarchiveID`) REFERENCES `tarchive` (`TarchiveID`), + CONSTRAINT `FK_mri_violations_log_scan_type` + FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`), CONSTRAINT `FK_mri_checks_group_1` FOREIGN KEY (`MriProtocolChecksGroupID`) REFERENCES `mri_protocol_checks_group` (`MriProtocolChecksGroupID`) ) ENGINE=InnoDB DEFAULT CHARSET=utf8; diff --git a/SQL/0000-00-03-ConfigTables.sql b/SQL/0000-00-03-ConfigTables.sql index e7b4d637a0d..83b460343a9 100644 --- a/SQL/0000-00-03-ConfigTables.sql +++ b/SQL/0000-00-03-ConfigTables.sql @@ -232,8 +232,8 @@ INSERT INTO Config (ConfigID, Value) SELECT ID, "." FROM ConfigSettings WHERE Na INSERT INTO Config (ConfigID, Value) SELECT ID, "(?i)phantom" FROM ConfigSettings WHERE Name="LegoPhantomRegex"; INSERT INTO Config (ConfigID, Value) SELECT ID, "(?i)phantom" FROM ConfigSettings WHERE Name="LivingPhantomRegex"; INSERT INTO Config (ConfigID, Value) SELECT ID, "false" FROM ConfigSettings WHERE Name="showTransferStatus"; -INSERT INTO Config (ConfigID, Value) SELECT cs.ID, GROUP_CONCAT(mst.Scan_Type) FROM ConfigSettings cs JOIN mri_scan_type mst WHERE cs.Name="tblScanTypes" AND mst.ID=44; -INSERT INTO Config (ConfigID, Value) SELECT cs.ID, GROUP_CONCAT(mst.Scan_Type) FROM ConfigSettings cs JOIN mri_scan_type mst WHERE cs.Name="tblScanTypes" AND mst.ID=45; +INSERT INTO Config (ConfigID, Value) SELECT cs.ID, GROUP_CONCAT(mst.MriScanTypeName) FROM ConfigSettings cs JOIN mri_scan_type mst WHERE cs.Name="tblScanTypes" AND mst.MriScanTypeID=44; +INSERT INTO Config (ConfigID, Value) SELECT cs.ID, GROUP_CONCAT(mst.MriScanTypeName) FROM ConfigSettings cs JOIN mri_scan_type mst WHERE cs.Name="tblScanTypes" AND mst.MriScanTypeID=45; INSERT INTO Config (ConfigID, Value) SELECT cs.ID, "mri_parameter_form" FROM ConfigSettings cs WHERE cs.Name="ImagingBrowserLinkedInstruments"; INSERT INTO Config (ConfigID, Value) SELECT cs.ID, "radiology_review" FROM ConfigSettings cs WHERE cs.Name="ImagingBrowserLinkedInstruments"; diff --git a/SQL/New_patches/2024-25-06-CleanMriScanType.sql b/SQL/New_patches/2024-25-06-CleanMriScanType.sql new file mode 100644 index 00000000000..f919d593ac3 --- /dev/null +++ b/SQL/New_patches/2024-25-06-CleanMriScanType.sql @@ -0,0 +1,51 @@ +-- Rename foreign key fields for consistency + +ALTER TABLE `mri_scan_type` + CHANGE `ID` `MriScanTypeID` int(11) unsigned NOT NULL auto_increment; + +ALTER TABLE `mri_scan_type` + CHANGE `Scan_type` `MriScanTypeName` VARCHAR(255) NOT NULL; + +ALTER TABLE `mri_protocol` + CHANGE `Scan_type` `MriScanTypeID` int(10) unsigned NOT NULL; + +ALTER TABLE `mri_protocol_checks` + CHANGE `Scan_type` `MriScanTypeID` int(11) unsigned DEFAULT NULL; + +ALTER TABLE `mri_violations_log` + CHANGE `Scan_type` `MriScanTypeID` int(11) unsigned DEFAULT NULL; + +ALTER TABLE `files` + CHANGE `AcquisitionProtocolID` `MriScanTypeID` int(10) unsigned default NULL; + +-- Add unique constraints on table that benefit from them + +ALTER TABLE `mri_protocol_group_target` + ADD CONSTRAINT `UK_mri_protocol_group_target` + UNIQUE (`ProjectID`, `CohortID`, `Visit_label`); + +ALTER TABLE `mri_scan_type` + ADD CONSTRAINT `UK_mri_scan_type_name` + UNIQUE KEY `MriScanTypeName` (`MriScanTypeName`); + +-- Drop wrong default + +ALTER TABLE `mri_protocol` + ALTER `MriScanTypeID` DROP DEFAULT; + +-- Add missing foreign key constraints + +ALTER TABLE `mri_protocol` + ADD CONSTRAINT `FK_mri_protocol_scan_type` + FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`); + +ALTER TABLE `mri_violations_log` + ADD CONSTRAINT `FK_mri_violations_log_scan_type` + FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`); + +-- Rename the existing constraints for consistency + +ALTER TABLE `mri_protocol_checks` + DROP FOREIGN KEY `FK_mriProtocolChecks_ScanType`, + ADD CONSTRAINT `FK_mri_protocol_checks_scan_type` + FOREIGN KEY (`MriScanTypeID`) REFERENCES `mri_scan_type` (`MriScanTypeID`); diff --git a/docs/deprecated_wiki/Setup/Initial Setup/Imaging Database/Imaging-Database.md b/docs/deprecated_wiki/Setup/Initial Setup/Imaging Database/Imaging-Database.md index c76d53aee8e..b0bd178a51e 100644 --- a/docs/deprecated_wiki/Setup/Initial Setup/Imaging Database/Imaging-Database.md +++ b/docs/deprecated_wiki/Setup/Initial Setup/Imaging Database/Imaging-Database.md @@ -17,43 +17,43 @@ *** - LORIS' Imaging insertion pipeline is composed of several Perl-based scripts and configuration files, which are housed in the [Loris-MRI git repo](https://github.com/aces/Loris-MRI). + LORIS' Imaging insertion pipeline is composed of several Perl-based scripts and configuration files, which are housed in the [Loris-MRI git repo](https://github.com/aces/Loris-MRI). [View schematic for the **LORIS Imaging insertion pipeline scripts**](https://demo.loris.ca/LORIS_Imaging_Pipeline_flowchart_ZM_20150608.png) [View step-by-step **LORIS MRI Pipeline Flowchart**](https://drive.google.com/open?id=0B3CILaw6mATHU0huc192R2I4MXM) -By default the pipeline is designed for **raw DICOM MRI** data, collected by a longitudinally-organized multisite study with a defined data acquisition protocol. -With modifications and further customization, it can handle any modality of imaging data. +By default the pipeline is designed for **raw DICOM MRI** data, collected by a longitudinally-organized multisite study with a defined data acquisition protocol. +With modifications and further customization, it can handle any modality of imaging data. -**Formats:** By default, all DICOMs are converted both to [MINC](https://www.mcgill.ca/bic/software/minc) and NIfTI formats by LORIS' imaging insertion pipeline. +**Formats:** By default, all DICOMs are converted both to [MINC](https://www.mcgill.ca/bic/software/minc) and NIfTI formats by LORIS' imaging insertion pipeline. > After installation, use the Config module to setting to enable/disable automatic conversion to NIfTI. ### 1) Install the [imaging pipeline codebase](https://github.com/aces/Loris-MRI) Follow the [Loris-MRI Readme](https://github.com/aces/Loris-MRI). -#### Installation Troubleshooting Notes -Key [configuration points](https://github.com/aces/Loris-MRI/tree/master) to verify: +#### Installation Troubleshooting Notes +Key [configuration points](https://github.com/aces/Loris-MRI/tree/master) to verify: -1. `/data/*` subdirectories were created by the imaging install script. -If not, it may be due to `root:root` ownership of the `/data/` mount on your system. +1. `/data/*` subdirectories were created by the imaging install script. +If not, it may be due to `root:root` ownership of the `/data/` mount on your system. Ensure these subdirectories are created manually, particularly: `/data/$PROJ/data/*`, `/data/$PROJ/bin/mri/` and `/data/incoming/` -2. `/data/$PROJ/` directory and subdirectories must be readable and executable by the Apache linux user. It may also help to ensure the /data/ mount is executable. After any modifications, ensure you restart apache. +2. `/data/$PROJ/` directory and subdirectories must be readable and executable by the Apache linux user. It may also help to ensure the /data/ mount is executable. After any modifications, ensure you restart apache. -* Depending on your operating system, some dependencies might be missing. During initial troubleshooting of the imaging pipeline, note any related error messages (e.g. `install_driver(mysql) failed: Can't locate DBD/mysql.pm`) and install missing packages as needed (e.g. `sudo apt-get install libdbi-perl`, `sudo apt-get install libdbd-mysql-perl`, `sudo apt-get install libarchive-zip-perl`). +* Depending on your operating system, some dependencies might be missing. During initial troubleshooting of the imaging pipeline, note any related error messages (e.g. `install_driver(mysql) failed: Can't locate DBD/mysql.pm`) and install missing packages as needed (e.g. `sudo apt-get install libdbi-perl`, `sudo apt-get install libdbd-mysql-perl`, `sudo apt-get install libarchive-zip-perl`). * If your MINC toolkit is older than 1.9.14 and your scans have no Date of Birth value, you may see an _age unit error_ during DICOM to MINC conversion. Instructions for compiling a more recent version available on [MNI-BIC GitHub](https://github.com/BIC-MNI/minc-toolkit-v2). ### 2) Set up imaging insertion scripts -Populating a few database tables and configuration settings will tell the imaging insertion scripts how and where to load scans: +Populating a few database tables and configuration settings will tell the imaging insertion scripts how and where to load scans: 1. #### **Configuration module** -Within the following sections: +Within the following sections: * _Imaging Pipeline_: Verify all paths * _WWW_: Verify Host and URL * _Paths_: Verify `LORIS-MRI code`, `MRI-Upload Directory`, `Images` settings @@ -65,17 +65,17 @@ Within the following sections: The `MRI_alias` field must be populated for each site that is scanning candidates or phantoms 3. #### **`Visit_Windows` table** - -Ensure the [Visit Windows table](https://github.com/aces/Loris/wiki/Project-Customization#iv-visit-windows) is fully populated with all valid Visit Labels. Scans will be identified and loaded based on these entries. + +Ensure the [Visit Windows table](https://github.com/aces/Loris/wiki/Project-Customization#iv-visit-windows) is fully populated with all valid Visit Labels. Scans will be identified and loaded based on these entries. 4. #### **`mri_protocol` table** Ensure your `mri_protocol` table contains an entry for each type of scan in the study protocol. -The `mri_protocol` table is used to identify incoming scans based on their SeriesDescription and scan parameter values (TE, TR, slice thickness, etc). By default, this table is populated with entries for t1, t2, fMRI and DTI, and the columns defining expected scan parameters (e.g. `TE_Range`) are defined very broadly. +The `mri_protocol` table is used to identify incoming scans based on their SeriesDescription and scan parameter values (TE, TR, slice thickness, etc). By default, this table is populated with entries for t1, t2, fMRI and DTI, and the columns defining expected scan parameters (e.g. `TE_Range`) are defined very broadly. -Note: `Scan_type` column values are defined in the `mri_scan_type` table (e.g. 44=t1); do not include hyphens, spaces or periods in your `mri_scan_type.Scan_type` column values. +Note: `Scan_type` column values are defined in the `mri_scan_type` table (e.g. 44=t1); do not include hyphens, spaces or periods in your `mri_scan_type.MriScanTypeName` column values. -#### Notes on Scan type identification +#### Notes on Scan type identification * By default, any scan will be inserted if it matches an _mri_protocol_ table entry. * To **force-load** a specific MRI acquisition see (below) [bypassing protocol violation checks](Bypassing-protocol-violation-checks) * To **whitelist/blacklist** specific scan types -- e.g. in case of protocol exclusion, case sensitivity or labelling variance -- modify the subroutine `isFileToBeRegisteredGivenProtocol()` in your `prod` file (`/data/$PROJ/bin/mri/dicom-archive/.loris_mri/prod`) e.g.: @@ -86,22 +86,22 @@ if($acquisitionProtocol eq 't1' or $acquisitionProtocol eq 't2' or $acquisitionP ### 3) Loading a scan into LORIS -Either the front-end (3a) Imaging Uploader module or the back-end (3b) insertion Pipeline scripts can be used to load a scan into LORIS. For projects loading large collections of data, batch execution of the Pipeline is recommended. Note that all data must be anonymized before either method can be used. +Either the front-end (3a) Imaging Uploader module or the back-end (3b) insertion Pipeline scripts can be used to load a scan into LORIS. For projects loading large collections of data, batch execution of the Pipeline is recommended. Note that all data must be anonymized before either method can be used. -### 3a) Imaging Uploader -The Imaging Uploader module provides a user-friendly interface for transferring an imaging dataset to the Loris server, before it is handled by the imaging pre-processing and insertion pipeline scripts. +### 3a) Imaging Uploader +The Imaging Uploader module provides a user-friendly interface for transferring an imaging dataset to the Loris server, before it is handled by the imaging pre-processing and insertion pipeline scripts. To configure the Imaging Uploader module for upload and insertion of scans via a browser, see the [Imaging Uploader Readme](https://github.com/aces/Loris/blob/master/modules/imaging_uploader/README.md) (within `modules/imaging_uploader` folder). -> **Missing visit label options?** The Imaging Uploader's Visit label options are drawn from the list of all timepoints registered in the database _where CenterID != 1_ (this CenterID [is reserved for DCC candidates](https://github.com/aces/Loris/wiki/Project-Customization#4-define-study-sites)). If you do not see a particular visit label option in the Uploader's dropdown select, simply create a new timepoint for any (non-DCC) candidate with that visit label (via Candidate menu, Access Profiles). The visit label should then automatically appear in the Uploader's dropdown options. +> **Missing visit label options?** The Imaging Uploader's Visit label options are drawn from the list of all timepoints registered in the database _where CenterID != 1_ (this CenterID [is reserved for DCC candidates](https://github.com/aces/Loris/wiki/Project-Customization#4-define-study-sites)). If you do not see a particular visit label option in the Uploader's dropdown select, simply create a new timepoint for any (non-DCC) candidate with that visit label (via Candidate menu, Access Profiles). The visit label should then automatically appear in the Uploader's dropdown options. ### Post-Upload: Pre-processing and Insertion into Loris -After an imaging dataset is uploaded to the Loris server, run the script _imaging_upload_file.pl_ to run the pre-processing and insertion pipeline scripts that load the imaging data into the Loris database tables. +After an imaging dataset is uploaded to the Loris server, run the script _imaging_upload_file.pl_ to run the pre-processing and insertion pipeline scripts that load the imaging data into the Loris database tables. Provide the upload_id value and uploaded dataset name (e.g. 608, AAA0001_513067_V01.zip): ```bash cd /data/$PROJ/bin/mri -uploadNeuroDB/imaging_upload_file.pl -profile prod -verbose -upload_id 608 /data/incoming/AAA0001_513067_V01.zip +uploadNeuroDB/imaging_upload_file.pl -profile prod -verbose -upload_id 608 /data/incoming/AAA0001_513067_V01.zip ``` > See also: [Logs](#log-files) @@ -109,31 +109,31 @@ uploadNeuroDB/imaging_upload_file.pl -profile prod -verbose -upload_id 608 /data #### Troubleshooting Insertion of uploaded datasets If upload was successful but issues were encountered with the imaging insertion pipeline scripts: * CentOS: check for additional dependencies/configurations (e.g. Dicom Dictionary path) in the detailed [CentOS Imaging Installation transcript](https://github.com/aces/Loris/wiki/CentOS-Imaging-installation-transcript) -* Manually re-run the entire pipeline sequence: _[imaging_upload_file.pl](#post-upload-pre-processing-and-insertion-into-loris)_ -* If one of the final steps such as the MINC conversion is failing, you may wish to just re-run the tarchiveLoader script. -* See also [re-running the Imaging pipeline](#re-running-the-imaging-pipeline) section for troubleshooting information. +* Manually re-run the entire pipeline sequence: _[imaging_upload_file.pl](#post-upload-pre-processing-and-insertion-into-loris)_ +* If one of the final steps such as the MINC conversion is failing, you may wish to just re-run the tarchiveLoader script. +* See also [re-running the Imaging pipeline](#re-running-the-imaging-pipeline) section for troubleshooting information. ### Setting up Imaging AutoLaunch -* To automatically preprocess, validate and insert all uploaded scans into the database, set _ImagingUploader Auto-Launch_ to "Yes" in the `Config` module, "Study" section. -* For initial setup and configuration, it is recommended to [manually run the imaging pipeline scripts](#3b-Running-the-insertion-pipeline) for each uploaded dataset. -* Note that your _lorisadmin_ user must also be part of the apache group (e.g. www-data). +* To automatically preprocess, validate and insert all uploaded scans into the database, set _ImagingUploader Auto-Launch_ to "Yes" in the `Config` module, "Study" section. +* For initial setup and configuration, it is recommended to [manually run the imaging pipeline scripts](#3b-Running-the-insertion-pipeline) for each uploaded dataset. +* Note that your _lorisadmin_ user must also be part of the apache group (e.g. www-data). #### Server Processes Manager -The Server Processes Manager module (Admin menu) shows all server jobs launched by Imaging Uploader. The exact Output and Error file names for each upload/insertion are easily found in this module. The Exit Code file describes the exit status of the job. +The Server Processes Manager module (Admin menu) shows all server jobs launched by Imaging Uploader. The exact Output and Error file names for each upload/insertion are easily found in this module. The Exit Code file describes the exit status of the job. -Caveat: By default these log files are output to `/tmp/` and deleted. To avoid deletion, edit [deleteProcessFiles()](https://github.com/aces/Loris/blob/master/modules/server_processes_manager/php/AbstractServerProcess.class.inc#L521) to return false. (See also: [Logs](#log-files)). +Caveat: By default these log files are output to `/tmp/` and deleted. To avoid deletion, edit [deleteProcessFiles()](https://github.com/aces/Loris/blob/master/modules/server_processes_manager/php/AbstractServerProcess.class.inc#L521) to return false. (See also: [Logs](#log-files)). ### 3b) Running the insertion pipeline -An alternative to the front-end Imaging Uploader is to load scans in LORIS via the back-end pipeline scripts. This is commonly used for automating the image insertion process. The pipeline can be launched in a single command, or by calling the constituent scripts in sequence: +An alternative to the front-end Imaging Uploader is to load scans in LORIS via the back-end pipeline scripts. This is commonly used for automating the image insertion process. The pipeline can be launched in a single command, or by calling the constituent scripts in sequence: #### One-step insertion The _batch_uploads_imageuploader_ script runs in a single step the imaging pre-processing and insertion pipeline sequence ([details: MRI-PR#133](https://github.com/aces/Loris-MRI/pull/133)). -```bash +```bash cd /data/$PROJ/bin/mri -./batch_uploads_imageuploader -profile prod < imageuploader_list >log_batch_imageuploader.txt 2>&1 +./batch_uploads_imageuploader -profile prod < imageuploader_list >log_batch_imageuploader.txt 2>&1 ``` Input file ```imageuploader_list``` must be a text file, listing one line per dataset (example below). The following fields are expected, separated by spaces: @@ -148,38 +148,38 @@ Example for 2 entries/scans to be uploaded (one human subject and one phantom): ``` #### Multi-step pipeline execution -Projects wishing to customize the execution of pipeline steps can run the following scripts in sequence: - > See also **[2015 Imaging Pipeline Flow Schematic](https://demo.loris.ca/LORIS_Imaging_Pipeline_flowchart_ZM_20150608.png)** and [older UML diagrams of MRI and DICOM tar pipeline](https://github.com/aces/Loris-MRI/wiki/Loris-MRI-imaging-tables-schema-(ERD)) +Projects wishing to customize the execution of pipeline steps can run the following scripts in sequence: + > See also **[2015 Imaging Pipeline Flow Schematic](https://demo.loris.ca/LORIS_Imaging_Pipeline_flowchart_ZM_20150608.png)** and [older UML diagrams of MRI and DICOM tar pipeline](https://github.com/aces/Loris-MRI/wiki/Loris-MRI-imaging-tables-schema-(ERD)) -* 1) **dicomTar.pl**: Tars DICOMs into /data/$PROJ/data/tarchive and loads the tarchive table with DICOM header data +* 1) **dicomTar.pl**: Tars DICOMs into /data/$PROJ/data/tarchive and loads the tarchive table with DICOM header data -E.g. Sample command to load a pre-registered subject visit from site DCC, given a DICOM dataset organized under $IncomingPath/PSCID_DCCID_VisitLabel/ +E.g. Sample command to load a pre-registered subject visit from site DCC, given a DICOM dataset organized under $IncomingPath/PSCID_DCCID_VisitLabel/ ```bash cd /data/$PROJ/bin/mri -dicom-archive/dicomTar.pl /data/$PROJ/data/incoming/DCC0001_513066_V01 /data/$PROJ/data/tarchive -verbose -clobber -database -profile prod -centerName DCC -mri_upload_update > yourLogFile1.txt 2>&1 +dicom-archive/dicomTar.pl /data/$PROJ/data/incoming/DCC0001_513066_V01 /data/$PROJ/data/tarchive -verbose -clobber -database -profile prod -centerName DCC -mri_upload_update > yourLogFile1.txt 2>&1 ``` -* 2) **tarchive_loader** script (or [batch_uploads_tarchive](other-imaging-scripts)): loads imaging datasets, runs minc conversion and stores header information into the files and parameter_file tables; Creates candidate sessions if none exists. +* 2) **tarchive_loader** script (or [batch_uploads_tarchive](other-imaging-scripts)): loads imaging datasets, runs minc conversion and stores header information into the files and parameter_file tables; Creates candidate sessions if none exists. ```bash cd /data/$PROJ/bin/mri uploadNeuroDB/tarchiveLoader -globLocation -profile prod /data/$PROJ/data/tarchive/DCM_2009-03-19_DCC0001_513066_V01.tar > _yourLogFile2.txt_ 2>&1 ``` ### Verify loaded images and Troubleshooting -Once an MRI scan session has been successfully inserted, it will be listed in the Imaging Browser main data table (also linked from the Dicom Archive subpage: "View Images"). +Once an MRI scan session has been successfully inserted, it will be listed in the Imaging Browser main data table (also linked from the Dicom Archive subpage: "View Images"). Verify in the Imaging Browser's View Session page that a jpg showing 3 slice orientations displays properly; if not, verify your permissions and restart apache: ```bash sudo chmod o+r /data/$PROJ/bin -sudo chmod o+r /data/$PROJ/data +sudo chmod o+r /data/$PROJ/data sudo service apache2 restart ``` -If download links do not work, ensure that the `/data/$PROJ/data/assembly` directory and subdirectories are executable. +If download links do not work, ensure that the `/data/$PROJ/data/assembly` directory and subdirectories are executable. #### Log files -Error and output messages from the imaging insertion scripts are logged in files created under the /data/$PROJ/data/logs/ directory. To view messages from the last script run, consult the most recent log file modified in this directory. These log files reference an _uploadID_ used to identify each imaging dataset -- consult the mri_upload database table to look up which uploadID has been assigned to your scans. +Error and output messages from the imaging insertion scripts are logged in files created under the /data/$PROJ/data/logs/ directory. To view messages from the last script run, consult the most recent log file modified in this directory. These log files reference an _uploadID_ used to identify each imaging dataset -- consult the mri_upload database table to look up which uploadID has been assigned to your scans. ***Caveat*** When the imaging insertion pipeline is auto-launched by the Imaging Uploader module, the pipeline scripts' log files are output to /tmp/ and deleted. To avoid deletion, edit the Server Processes Manager function [deleteProcessFiles()](https://github.com/aces/Loris/blob/master/modules/server_processes_manager/php/AbstractServerProcess.class.inc#L521) to return false instead of true. @@ -191,12 +191,12 @@ Scans whose parameters can't be matched against the `mri_protocol` table during ##### Bypassing protocol violation checks -For cases when a scan has triggered a protocol violation, the minc volume can be **force-loaded** into LORIS by running: +For cases when a scan has triggered a protocol violation, the minc volume can be **force-loaded** into LORIS by running: ```bash uploadNeuroDB/minc_insertion.pl -acquisition_protocol t2w -bypass_extra_file_checks -create_minc_pics -profile prod -globLocation -force -tarchivePath _/data/project/dataTransfer/library/2009/DCM_2009-09-25_project_20110214_185904581.tar_ -mincPath _/data/project/data/trashbin/TarLoad-3-34-pVzGC5/xxx0067_703739_v12_20090925_222403_18e1_mri.mnc_ ``` -Note carefully the following arguments: +Note carefully the following arguments: * _acquisition_protocol_ : must be a known scan type according to the `mri_scan_type` table * _tarchive_Path_ : the DICOM tarball * _mincPath_ : note this file may haven placed in the trashbin directory @@ -205,28 +205,28 @@ See also: [MRI-PR#141](https://github.com/aces/Loris-MRI/pull/141) for more exam #### Re-running the Imaging pipeline -> When the need arises to re-load imaging data in LORIS, it is generally not sufficient to just re-run the minc/nifti loading step (tarchiveLoader or batch_uploads_tarchive). [The pipeline steps](#multi-step-pipeline-execution) must be re-run starting with dicomTar.pl. +> When the need arises to re-load imaging data in LORIS, it is generally not sufficient to just re-run the minc/nifti loading step (tarchiveLoader or batch_uploads_tarchive). [The pipeline steps](#multi-step-pipeline-execution) must be re-run starting with dicomTar.pl. -In general, to re-load an imaging dataset through the pipeline from start (from dicomTar.pl) -- Ensure entries from the previous attempt to load the dataset have been removed from the following database tables: +In general, to re-load an imaging dataset through the pipeline from start (from dicomTar.pl) -- Ensure entries from the previous attempt to load the dataset have been removed from the following database tables: * `parameter_file` * `tarchive` * `mri_acquisition_dates` * `files` (best to delete from this table last) -* `session` - _not recommended_ - only if necessary, and only if no other data is associated to this session e.g. on the Behavioural side of Loris. +* `session` - _not recommended_ - only if necessary, and only if no other data is associated to this session e.g. on the Behavioural side of Loris. -It is also recommended to remove from the tarchive directory the last generated *.tar package for this dataset. +It is also recommended to remove from the tarchive directory the last generated *.tar package for this dataset. If any Quality Control flags or comments exist for these scans, you may also wish to delete specific records from `files_qcstatus` and the `mri_feedback_*` tables. For backing up, re-labelling and re-loading MRI datasets with QC information, see [Beta Tutorial](https://github.com/aces/Loris/wiki/Reloading-MRI-data-for-mislabelled-session) -#### Multiple scanner datasets per session +#### Multiple scanner datasets per session -In cases where a subject was scanned in two scanner sessions within a single study Timepoint, both datasets should be loaded and associated to the same visit label / session table record. Create separate tarchives for each DICOM dataset upload each to the same visit. +In cases where a subject was scanned in two scanner sessions within a single study Timepoint, both datasets should be loaded and associated to the same visit label / session table record. Create separate tarchives for each DICOM dataset upload each to the same visit. ### 5) Queue Manager (optional/recommended) - Installing Sun GridEngine (SGE) is useful for managing the server processing load for all scripts. Use the `Configuration` module setting `isqsub` to tell the pipeline whether a queue manager is installed. + Installing Sun GridEngine (SGE) is useful for managing the server processing load for all scripts. Use the `Configuration` module setting `isqsub` to tell the pipeline whether a queue manager is installed. ### 6) Email Notifications @@ -234,22 +234,22 @@ In cases where a subject was scanned in two scanner sessions within a single stu ### 7) Visualization: [BrainBrowser](https://brainbrowser.cbrain.mcgill.ca/) -[BrainBrowser](https://brainbrowser.cbrain.mcgill.ca/), a web-enabled viewer for real-time exploration of 3D images, comes embedded within LORIS, including a 2D Volume viewer that can overlay 2 acquisitions. A 3D surface viewer can be used for processed surface datasets. +[BrainBrowser](https://brainbrowser.cbrain.mcgill.ca/), a web-enabled viewer for real-time exploration of 3D images, comes embedded within LORIS, including a 2D Volume viewer that can overlay 2 acquisitions. A 3D surface viewer can be used for processed surface datasets. -Troubleshooting notes: +Troubleshooting notes: * `/data/$PROJ` directory and subdirectories must be readable and executable by the Apache linux user. -* Verify the Configuration module (_Paths_) `MINC files` setting is `/data/$PROJ/data/`. +* Verify the Configuration module (_Paths_) `MINC files` setting is `/data/$PROJ/data/`. ### 8) Quality Control within the Imaging Browser -The Imaging Browser module enables web-based Quality Control (QC) of acquisitions. +The Imaging Browser module enables web-based Quality Control (QC) of acquisitions. MRI scans can be viewed in 3D space using the embedded [BrainBrowser visualization tool](https://github.com/aces/Loris/wiki/Imaging-Database#7-visualization-brainbrowser). QC flags, comments and statistics are fully integrated and can be enabled by: -* Grant QC permissions in User Accounts (or add `mri_feedback` permission via `user_perm_rel` table). -* Scan types will be populated automatically once images are inserted in the database. Use the "Selected" dropdown to identify the single best acquistion for a given type (e.g. t1) for the scan session. -* QC comments should already be enabled via the feedback_mri_comment_types table. +* Grant QC permissions in User Accounts (or add `mri_feedback` permission via `user_perm_rel` table). +* Scan types will be populated automatically once images are inserted in the database. Use the "Selected" dropdown to identify the single best acquistion for a given type (e.g. t1) for the scan session. +* QC comments should already be enabled via the feedback_mri_comment_types table. ### 9) Anonymization diff --git a/modules/api/php/provisioners/projectimagesrowprovisioner.class.inc b/modules/api/php/provisioners/projectimagesrowprovisioner.class.inc index 7e949250762..cca8e0401bc 100644 --- a/modules/api/php/provisioners/projectimagesrowprovisioner.class.inc +++ b/modules/api/php/provisioners/projectimagesrowprovisioner.class.inc @@ -44,20 +44,20 @@ class ProjectImagesRowProvisioner extends DBRowProvisioner SELECT s.CandID as Candidate, c.PSCID as PSCID, - c.Entity_type as Entity_type, + c.Entity_type as Entity_type, s.Visit_label as Visit, s.Date_visit as Visit_date, s.CenterID as CenterID, p.Name as Site, f.InsertTime as InsertTime, f.File as File, - mst.Scan_type as ScanType, + mst.MriScanTypeName AS ScanType, qc.QCStatus as QC_status, qc.Selected as Selected FROM files f LEFT JOIN mri_scan_type mst - ON (mst.ID = f.AcquisitionProtocolID) + ON (mst.MriScanTypeID = f.MriScanTypeID) LEFT JOIN session s ON (f.SessionID = s.ID) LEFT JOIN candidate c diff --git a/modules/configuration/php/configuration.class.inc b/modules/configuration/php/configuration.class.inc index 06c2266f1b4..576b737f4de 100644 --- a/modules/configuration/php/configuration.class.inc +++ b/modules/configuration/php/configuration.class.inc @@ -52,13 +52,12 @@ class Configuration extends \NDB_Form $DB = $this->loris->getDatabaseConnection(); $scans = $DB->pselect( - "SELECT Scan_type - FROM mri_scan_type", + "SELECT MriScanTypeName FROM mri_scan_type", [] ); $scan_types = ['' => '']; foreach ($scans as $type) { - $val = $type['Scan_type']; + $val = $type['MriScanTypeName']; $scan_types[$val] = $val; } @@ -107,8 +106,8 @@ class Configuration extends \NDB_Form $DB = $this->loris->getDatabaseConnection(); $parentConfigItems = $DB->pselect( - "SELECT Label, Name - FROM ConfigSettings + "SELECT Label, Name + FROM ConfigSettings WHERE Parent IS NULL AND Visible=1 ORDER BY OrderNumber", [] ); diff --git a/modules/dicom_archive/php/viewdetails.class.inc b/modules/dicom_archive/php/viewdetails.class.inc index 4f8ae8239ff..b3fde4622fc 100644 --- a/modules/dicom_archive/php/viewdetails.class.inc +++ b/modules/dicom_archive/php/viewdetails.class.inc @@ -259,7 +259,7 @@ class ViewDetails extends \NDB_Form function _setProtocols() { try { - $query = "SELECT Scan_type, TR_min, TR_max, TE_min, TE_max, + $query = "SELECT MriScanTypeID, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max FROM mri_protocol"; $this->protocols = $this->DB->pselect($query, []); @@ -293,7 +293,7 @@ class ViewDetails extends \NDB_Form $protocol['slice_thickness_max'] )) ) { - return $this->_getProtocolNameFromID($protocol['Scan_type']); + return $this->_getProtocolNameFromID($protocol['MriScanTypeID']); } } return "Unknown"; @@ -338,9 +338,10 @@ class ViewDetails extends \NDB_Form function _getProtocolNameFromID($id): string { try { - $query = "SELECT Scan_type FROM mri_scan_type WHERE ID=:ID"; + $query = "SELECT MriScanTypeName FROM mri_scan_type + WHERE MriScanTypeID=:ID"; $array = $this->DB->pselectRow($query, ['ID' => $id]); - return $array['Scan_type'] ?? 'Unknown'; + return $array['MriScanTypeName'] ?? 'Unknown'; } catch (\LorisException $e) { return "Unknown"; } diff --git a/modules/imaging_browser/jsx/CandidateScanQCSummaryWidget.js b/modules/imaging_browser/jsx/CandidateScanQCSummaryWidget.js index 2e594c13ca6..252b962e565 100644 --- a/modules/imaging_browser/jsx/CandidateScanQCSummaryWidget.js +++ b/modules/imaging_browser/jsx/CandidateScanQCSummaryWidget.js @@ -84,7 +84,7 @@ CandidateScanQCSummaryWidget.propTypes = { function getModalities(files) { let modalities = {}; for (const row of Object.values(files)) { - modalities[row.Scan_type] = true; + modalities[row.ScanType] = true; } return Object.keys(modalities).sort(); } @@ -171,7 +171,7 @@ function getDataObject(modalities, files) { for (let i = 0; i < files.length; i++) { const session = files[i]; const QC = session.QC == '' ? 'Other' : session.QC; - data[session.Scan_type][QC][session.Visit_label] = session.nfiles; + data[session.ScanType][QC][session.Visit_label] = session.nfiles; } return data; } diff --git a/modules/imaging_browser/php/feedback_mri_popup.class.inc b/modules/imaging_browser/php/feedback_mri_popup.class.inc index 2d8c1c59c63..dad69227221 100644 --- a/modules/imaging_browser/php/feedback_mri_popup.class.inc +++ b/modules/imaging_browser/php/feedback_mri_popup.class.inc @@ -164,13 +164,14 @@ class Feedback_MRI_Popup extends \NDB_Page // get identifier of subject/volume if ($feedbackObj->fileID) { $query = "SELECT c.CandID AS DCCID, c.PSCID, s.Visit_label, - s.CohortID, f.File AS File_name, st.Scan_type + s.CohortID, f.File AS File_name, + mst.MriScanTypeName AS ScanType FROM files AS f, session AS s, candidate AS c, - mri_scan_type AS st + mri_scan_type AS mst WHERE f.FileID=:FID AND f.SessionID=s.ID AND s.CandID=c.CandID - AND f.AcquisitionProtocolID=st.ID + AND f.MriScanTypeID=mst.MriScanTypeID AND s.Active='Y'"; $qparams = ['FID' => $feedbackObj->fileID]; diff --git a/modules/imaging_browser/php/imagingbrowserrowprovisioner.class.inc b/modules/imaging_browser/php/imagingbrowserrowprovisioner.class.inc index ab2772cc9cb..48571774e7d 100644 --- a/modules/imaging_browser/php/imagingbrowserrowprovisioner.class.inc +++ b/modules/imaging_browser/php/imagingbrowserrowprovisioner.class.inc @@ -73,14 +73,14 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi foreach ($scan_id_types as $key => $value) { if ($isFirst) { $acqpif = "IF(FIND_IN_SET({$key},GROUP_CONCAT( - DISTINCT AcquisitionProtocolID))>0 "; + DISTINCT f.MriScanTypeID))>0 "; $newQueryCase = "AND(FIND_IN_SET({$key},GROUP_CONCAT( - DISTINCT AcquisitionProtocolID))"; + DISTINCT f.MriScanTypeID))"; } else { $acqpif .= "OR FIND_IN_SET({$key},GROUP_CONCAT( - DISTINCT AcquisitionProtocolID))>0 "; + DISTINCT f.MriScanTypeID))>0 "; $newQueryCase .= " OR FIND_IN_SET({$key},GROUP_CONCAT( - DISTINCT AcquisitionProtocolID))"; + DISTINCT f.MriScanTypeID))"; } $isFirst = false; } @@ -159,7 +159,7 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi MIN(files_qcstatus.QCStatus+0) as $qc[$key] FROM files JOIN files_qcstatus USING (FileID) - WHERE files.AcquisitionProtocolID= $key + WHERE files.MriScanTypeID= $key AND files_qcstatus.QCStatus IN (1, 2) GROUP BY files.SessionID) $pass[$key] ON ($pass[$key].SessionID=f.SessionID @@ -196,7 +196,7 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi $NewDataSubquery as New_Data, GROUP_CONCAT(DISTINCT OutputType) as Links, s.ID as sessionID, - GROUP_CONCAT(DISTINCT modality.Scan_type) as sequenceType, + GROUP_CONCAT(DISTINCT mst.MriScanTypeName) as sequenceType, $PendingNewquery as pending, s.CenterID as CenterID, c.Entity_type as entityType, @@ -208,8 +208,8 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi LEFT JOIN Project ON (s.ProjectID=Project.ProjectID) JOIN files f ON (f.SessionID=s.ID) LEFT JOIN files_qcstatus fqc ON (fqc.FileID=f.FileID) - LEFT JOIN mri_scan_type modality ON - (f.AcquisitionProtocolID=modality.ID) + LEFT JOIN mri_scan_type mst ON + (f.MriScanTypeID=mst.MriScanTypeID) $left_joins WHERE s.Active = 'Y' AND diff --git a/modules/imaging_browser/php/module.class.inc b/modules/imaging_browser/php/module.class.inc index b338cc8d459..41d83bb4bb6 100644 --- a/modules/imaging_browser/php/module.class.inc +++ b/modules/imaging_browser/php/module.class.inc @@ -94,14 +94,14 @@ class Module extends \Module $scansummary = $DB->pselect( "SELECT s.Visit_label, - mst.Scan_type, + mst.MriScanTypeName as ScanType, COALESCE(fqc.QCStatus, '') as QC, COUNT(*) as nfiles FROM files f JOIN session s ON (s.ID=f.sessionID) - JOIN mri_scan_type mst ON (f.AcquisitionProtocolID=mst.ID) + JOIN mri_scan_type mst ON (f.MriScanTypeID=mst.MriScanTypeID) LEFT JOIN files_qcstatus fqc ON (fqc.FileID=f.FileID) WHERE CandID=:cid AND f.OutputType='native' - GROUP BY s.Visit_label, mst.Scan_type, QC", + GROUP BY s.Visit_label, mst.MriScanTypeName, QC", ['cid' => $candidate->getCandID()], ); diff --git a/modules/imaging_browser/php/queryengine.class.inc b/modules/imaging_browser/php/queryengine.class.inc index 818c95c1228..a52f55bdca8 100644 --- a/modules/imaging_browser/php/queryengine.class.inc +++ b/modules/imaging_browser/php/queryengine.class.inc @@ -104,11 +104,11 @@ class QueryEngine extends \LORIS\Data\Query\SQLQueryEngine FROM files f JOIN session s ON (f.SessionID=s.ID) JOIN candidate c ON (c.CandID=s.CandID) - JOIN mri_scan_type mst ON (mst.ID=f.AcquisitionProtocolID) + JOIN mri_scan_type mst ON (mst.MriScanTypeID=f.MriScanTypeID) WHERE c.Active='Y' AND s.Active='Y' AND - mst.Scan_type=:scantype AND + mst.MriScanTypeName=:scantype AND c.Entity_Type='Human' ORDER BY s.Visit_label", ['scantype' => $item->getModality()], @@ -148,10 +148,10 @@ class QueryEngine extends \LORIS\Data\Query\SQLQueryEngine // alongside one that does, we use a subselect here. if (str_ends_with($item->getName(), "_file")) { return "(SELECT File FROM files as files2 - JOIN mri_scan_type - ON (files2.AcquisitionProtocolID=mri_scan_type.ID) + JOIN mri_scan_type mst + ON (files2.MriScanTypeID=mst.MriScanTypeID) WHERE files2.FileID=files.FileID - AND mri_scan_type.Scan_type='{$modality}')"; + AND mst.MriScanTypeName='{$modality}')"; } else if (str_ends_with($item->getName(), "_url")) { return "(SELECT CONCAT( \"$this->baseURL\", @@ -159,13 +159,13 @@ class QueryEngine extends \LORIS\Data\Query\SQLQueryEngine c.CandID, \"/\", s.Visit_label, - \"/images/\", + \"/images/\", SUBSTRING_INDEX(files.File, '/', -1) ) FROM files as files2 - JOIN mri_scan_type - ON (files2.AcquisitionProtocolID=mri_scan_type.ID) + JOIN mri_scan_type mst + ON (files2.MriScanTypeID=mst.MriScanTypeID) WHERE files2.FileID=files.FileID - AND mri_scan_type.Scan_type='{$modality}')"; + AND mst.MriScanTypeName='{$modality}')"; } } if ($item instanceof QCDictionaryItem) { @@ -173,13 +173,13 @@ class QueryEngine extends \LORIS\Data\Query\SQLQueryEngine $this->addTable('LEFT JOIN session s ON (s.CandID=c.CandID)'); $this->addTable("LEFT JOIN files ON (s.ID=files.SessionID)"); - return "(SELECT QCStatus FROM files_qcstatus + return "(SELECT QCStatus FROM files_qcstatus JOIN files as files2 - JOIN mri_scan_type - ON (files2.AcquisitionProtocolID=mri_scan_type.ID) + JOIN mri_scan_type mst + ON (files2.MriScanTypeID=mst.MriScanTypeID) WHERE files_qcstatus.FileID=files.FileID AND files2.FileID=files.FileID - AND mri_scan_type.Scan_type='{$modality}')"; + AND mst.MriScanTypeName='{$modality}')"; } throw new \DomainException("Invalid field " . $item->getName()); diff --git a/modules/imaging_browser/php/viewsession.class.inc b/modules/imaging_browser/php/viewsession.class.inc index 010f495be1c..927616abf9c 100644 --- a/modules/imaging_browser/php/viewsession.class.inc +++ b/modules/imaging_browser/php/viewsession.class.inc @@ -163,7 +163,7 @@ class ViewSession extends \NDB_Form $extra_where_string .= " AND OutputType='native'"; } elseif ($outputType=="skull_mask") { $extra_where_string .= " AND (OutputType='skull_mask' - OR (OutputType='native' AND AcquisitionProtocolID='44') )"; + OR (OutputType='native' AND MriScanTypeID='44') )"; } else { $extra_where_string .= " AND (OutputType=:outputType OR OutputType='linreg')"; @@ -175,11 +175,11 @@ class ViewSession extends \NDB_Form "SELECT files.FileID, files.ScannerID FROM files LEFT JOIN files_qcstatus as sel on (files.FileID=sel.FileID) - WHERE SessionID=:SID AND (AcquisitionProtocolID IS NULL - OR AcquisitionProtocolID not in (1, 2, 3, 52)) + WHERE SessionID=:SID AND (MriScanTypeID IS NULL + OR MriScanTypeID not in (1, 2, 3, 52)) $extra_where_string ORDER BY files.OutputType, - files.AcquisitionProtocolID, + files.MriScanTypeID, files.File", $args ); @@ -303,7 +303,7 @@ class ViewSession extends \NDB_Form $JsonFile = $FileObj->getParameter('bids_json_file'); $OtherTimepoints = $this->_getFilesAcrossTimepoints( (int)$FileObj->getParameter('SessionID'), - (int)$FileObj->getParameter('AcquisitionProtocolID') + (int)$FileObj->getParameter('MriScanTypeID') ); $manualCaveatViolationsResolvedID @@ -574,21 +574,25 @@ class ViewSession extends \NDB_Form $insertSet['PhaseEncodingDirection'] = $file->getParameter( 'PhaseEncodingDirection' ); - $insertSet['EchoTime'] = $file->getParameter('echo_time'); - $insertSet['EchoNumber'] = $file->getParameter('echo_numbers'); - $insertSet['TarchiveID'] = $file->getParameter( + $insertSet['EchoTime'] = $file->getParameter('echo_time'); + $insertSet['EchoNumber'] = $file->getParameter( + 'echo_numbers' + ); + $insertSet['TarchiveID'] = $file->getParameter( 'TarchiveSource' ); - $insertSet['MincFile'] = $file->getParameter('File'); - $insertSet['PatientName'] = $file->getParameter('patient_name'); - $insertSet['CandID'] = $candid; - $insertSet['Visit_label'] = $visit_label; - $insertSet['CheckID'] = null; - $insertSet['Scan_type'] = $file->getParameter( - 'AcquisitionProtocolID' + $insertSet['MincFile'] = $file->getParameter('File'); + $insertSet['PatientName'] = $file->getParameter( + 'patient_name' + ); + $insertSet['CandID'] = $candid; + $insertSet['Visit_label'] = $visit_label; + $insertSet['CheckID'] = null; + $insertSet['MriScanTypeID'] = $file->getParameter( + 'MriScanTypeID' ); - $insertSet['Severity'] = 'warning'; - $insertSet['Header'] = 'Manual Caveat Set by ' + $insertSet['Severity'] = 'warning'; + $insertSet['Header'] = 'Manual Caveat Set by ' . $user->getUsername(); // The TimeRun column is really the time at which the @@ -847,7 +851,7 @@ class ViewSession extends \NDB_Form $selectResults = $this->_DB->pselect( "SELECT FileID FROM files ". - "WHERE AcquisitionProtocolID =:initialFileAcquisitionID ". + "WHERE MriScanTypeID =:initialFileAcquisitionID ". "AND SessionID in (SELECT s2.ID FROM session s1 RIGHT JOIN session s2 ". "ON s1.CandID = s2.CandID WHERE s1.ID =:initialFileID)", [ diff --git a/modules/imaging_browser/test/ImagingQueryEngineTest.php b/modules/imaging_browser/test/ImagingQueryEngineTest.php index 5e1ee53c596..0495a7908d3 100644 --- a/modules/imaging_browser/test/ImagingQueryEngineTest.php +++ b/modules/imaging_browser/test/ImagingQueryEngineTest.php @@ -139,12 +139,12 @@ function setUp() : void "mri_scan_type", [ [ - 'ID' => 98, - 'Scan_type' => 'ScanType1', + 'MriScanTypeID' => 98, + 'MriScanTypeName' => 'ScanType1', ], [ - 'ID' => 99, - 'Scan_type' => 'ScanType2', + 'MriScanTypeID' => 99, + 'MriScanTypeName' => 'ScanType2', ], ] ); @@ -153,28 +153,28 @@ function setUp() : void "files", [ [ - 'FileID' => 1, - 'SessionID' => 1, - 'AcquisitionProtocolID' => 98, - 'File' => 'test/abc.file' + 'FileID' => 1, + 'SessionID' => 1, + 'MriScanTypeID' => 98, + 'File' => 'test/abc.file' ], [ - 'FileID' => 2, - 'SessionID' => 3, - 'AcquisitionProtocolID' => 98, - 'File' => 'test/abc.file1' + 'FileID' => 2, + 'SessionID' => 3, + 'MriScanTypeID' => 98, + 'File' => 'test/abc.file1' ], [ - 'FileID' => 3, - 'SessionID' => 3, - 'AcquisitionProtocolID' => 98, - 'File' => 'test/abc.file2' + 'FileID' => 3, + 'SessionID' => 3, + 'MriScanTypeID' => 98, + 'File' => 'test/abc.file2' ], [ - 'FileID' => 4, - 'SessionID' => 3, - 'AcquisitionProtocolID' => 99, - 'File' => 'test/Scantype2' + 'FileID' => 4, + 'SessionID' => 3, + 'MriScanTypeID' => 99, + 'File' => 'test/Scantype2' ], ] ); diff --git a/modules/imaging_browser/test/TestPlan.md b/modules/imaging_browser/test/TestPlan.md index f42abb03824..dbfb9eb9bad 100644 --- a/modules/imaging_browser/test/TestPlan.md +++ b/modules/imaging_browser/test/TestPlan.md @@ -1,16 +1,16 @@ ## Imaging Browser test plan - + ### Imaging Browser main page 1. User can access Imaging Browser module front page if and only if they have permission `imaging_browser_view_site`, `imaging_browser_view_allsites`, `imaging_browser_phantom_allsites` or `imaging_browser_phantom_ownsite`. [Partial Automation Testing] -2. User can see other sites Imaging datasets if and only if has permission `imaging_browser_view_allsites`. User can see only own site Imaging datasets if and only if has permission `imaging_browser_view_site`. User can see phantom data only from across all sites with the `imaging_browser_phantom_allsites`, and from own sites with `imaging_browser_phantom_ownsite`. +2. User can see other sites Imaging datasets if and only if has permission `imaging_browser_view_allsites`. User can see only own site Imaging datasets if and only if has permission `imaging_browser_view_site`. User can see phantom data only from across all sites with the `imaging_browser_phantom_allsites`, and from own sites with `imaging_browser_phantom_ownsite`. [Partial Automation Testing] 3. Test that all filters work. When the Site filter is empty, all sites with which the user is associated should be displayed. Every site should be displayed if the user has the `imaging_browser_view_allsites` permission. [Automation Testing] 4. Test Clear Filters button. [Automation Testing] 5. Test column table is sortable by headers. 6. Ensure that the hyperlinks in the Links column are active and load the correct dataset. -7. Add more modalities (from the Scan_type column of the `mri_scan_type` table) to the Configuration -> Imaging Modules -> Tabulated Scan Types field, and ensure that for each added modality, a new corresponding column shows up in the Imaging Browser table. (This requires back-end access) +7. Add more modalities (from the `MriScanTypeName` column of the `mri_scan_type` table) to the Configuration -> Imaging Modules -> Tabulated Scan Types field, and ensure that for each added modality, a new corresponding column shows up in the Imaging Browser table. (This requires back-end access) ### View Session / Volume List 8. Make sure a user can only access the viewSession page if and only if at least one of the following cases is true: @@ -18,8 +18,8 @@ - The session's candidate is of entity type "scanner" and the user has the permission `imaging_browser_phantom_ownsite` while being affiliated to the site and the project to which this session belongs. - The session's candidate is of entity type "human" and the user has the permission `imaging_browser_view_allsites` while being affiliated to the project to which this session belongs. - The session's candidate is of entity type "human" and the user has the permission `imaging_browser_view_site` while being affiliated to the site and the project to which this session belongs. -9. Sidebar: - - Ensure that all links work, including the Download DICOM option. +9. Sidebar: + - Ensure that all links work, including the Download DICOM option. - Ensure that projects can customize (add/remove) their list of instruments that can be linked to from the Configuration -> Imaging Modules -> Imaging Browser Links to Insruments. 10. Select an image using the checkbox above the volume previews. Click the "3D Only" and "3D + Overlay" buttons. These should load the Brain Browser module. 11. Visit level QC controls (Pass/Fail, Pending, Visit Level Caveat) viewable to all, editable if and only if user has permission `imaging_browser_qc`. @@ -53,7 +53,7 @@ prepended with the Patient Name. 25. Longitudinal View button launches the BrainBrowser with images of the chosen modality for that specific candidate across visits/timepoints. ### MRI-QC : Scan-level (QC Comments) dialog window -26. With the permission `imaging_browser_qc`, edit comments, checkboxes, and dropdown values. +26. With the permission `imaging_browser_qc`, edit comments, checkboxes, and dropdown values. 27. Clicking Save should update the values. 28. Data should not be editable without this permission. diff --git a/modules/imaging_browser/test/imaging_browserTest.php b/modules/imaging_browser/test/imaging_browserTest.php index 0e1dd1cee76..4e18b78626d 100644 --- a/modules/imaging_browser/test/imaging_browserTest.php +++ b/modules/imaging_browser/test/imaging_browserTest.php @@ -244,25 +244,25 @@ public function setUp(): void $this->DB->insert( 'files', array( - 'FileID' => 1111, - 'SessionID' => 999998, - 'File' => 'assembly/506145/V1/mri/native/' . + 'FileID' => 1111, + 'SessionID' => 999998, + 'File' => 'assembly/506145/V1/mri/native/' . 'loris-MRI_506145_V1_t2_001.mnc', - 'SeriesUID' => '1.3.12.2.1107.5.2.32.35049.' . + 'SeriesUID' => '1.3.12.2.1107.5.2.32.35049.' . '2014021711090977356751313.0.0.0', - 'EchoTime' => 0.011, - 'CoordinateSpace' => 'native', - 'OutputType' => 'native', - 'AcquisitionProtocolID' => 45, - 'FileType' => 'mnc', - 'InsertedByUserID' => 'lorisadmin', - 'InsertTime' => 1454951768, - 'SourcePipeline' => null, - 'PipelineDate' => null, - 'SourceFileID' => 1111, - 'ProcessProtocolID' => 1111, - 'Caveat' => 0, - 'TarchiveSource' => 263, + 'EchoTime' => 0.011, + 'CoordinateSpace' => 'native', + 'OutputType' => 'native', + 'MriScanTypeID' => 45, + 'FileType' => 'mnc', + 'InsertedByUserID' => 'lorisadmin', + 'InsertTime' => 1454951768, + 'SourcePipeline' => null, + 'PipelineDate' => null, + 'SourceFileID' => 1111, + 'ProcessProtocolID' => 1111, + 'Caveat' => 0, + 'TarchiveSource' => 263, ) ); // @codingStandardsIgnoreEnd @@ -271,25 +271,25 @@ public function setUp(): void $this->DB->insert( 'files', array( - 'FileID' => 2222, - 'SessionID' => 999999, - 'File' => 'assembly/506145/V1/mri/native/' . + 'FileID' => 2222, + 'SessionID' => 999999, + 'File' => 'assembly/506145/V1/mri/native/' . 'loris-MRI_506145_V1_t1_001.mnc', - 'SeriesUID' => '1.3.12.2.1107.5.2.32.35049.' . + 'SeriesUID' => '1.3.12.2.1107.5.2.32.35049.' . '2014021711090977356751313.0.0.0', - 'EchoTime' => 0.011, - 'CoordinateSpace' => 'native', - 'OutputType' => 'native', - 'AcquisitionProtocolID' => 44, - 'FileType' => 'mnc', - 'InsertedByUserID' => 'lorisadmin', - 'InsertTime' => 1454951768, - 'SourcePipeline' => null, - 'PipelineDate' => null, - 'SourceFileID' => 2222, - 'ProcessProtocolID' => 2222, - 'Caveat' => 0, - 'TarchiveSource' => 264, + 'EchoTime' => 0.011, + 'CoordinateSpace' => 'native', + 'OutputType' => 'native', + 'MriScanTypeID' => 44, + 'FileType' => 'mnc', + 'InsertedByUserID' => 'lorisadmin', + 'InsertTime' => 1454951768, + 'SourcePipeline' => null, + 'PipelineDate' => null, + 'SourceFileID' => 2222, + 'ProcessProtocolID' => 2222, + 'Caveat' => 0, + 'TarchiveSource' => 264, ) ); // @codingStandardsIgnoreStart diff --git a/modules/imaging_qc/php/imaging_qc.class.inc b/modules/imaging_qc/php/imaging_qc.class.inc index 2ee8abea17c..524666bbba0 100644 --- a/modules/imaging_qc/php/imaging_qc.class.inc +++ b/modules/imaging_qc/php/imaging_qc.class.inc @@ -60,14 +60,14 @@ class Imaging_QC extends \NDB_Menu_Filter $toTable_scan_types = $config->getSetting('tblScanTypes'); $all_scan_types_2d = $db->pselect( - "SELECT ID, Scan_type FROM mri_scan_type mri", + "SELECT MriScanTypeID, MriScanTypeName FROM mri_scan_type", [] ); $all_scan_types = []; foreach ($all_scan_types_2d as $row) { - $type = $row['Scan_type']; - $all_scan_types[$row['ID']] = $type; + $type = $row['MriScanTypeName']; + $all_scan_types[$row['MriScanTypeID']] = $type; } // Get the intersection between all the scan types and those @@ -117,7 +117,7 @@ class Imaging_QC extends \NDB_Menu_Filter * FROM tarchive_series ts - LEFT JOIN mri_protocol mp ON mp.Scan_type=".$acqID." + LEFT JOIN mri_protocol mp ON mp.MriScanTypeID=".$acqID." WHERE ts.TarchiveID = t.TarchiveID AND (ts.EchoTime BETWEEN mp.TE_min AND mp.TE_max) @@ -158,9 +158,9 @@ class Imaging_QC extends \NDB_Menu_Filter LEFT JOIN mri_parameter_form m ON (m.CommentID=f.CommentID) LEFT JOIN tarchive t ON (t.SessionID=s.ID) LEFT JOIN files fi ON (fi.SessionID=s.ID AND - fi.AcquisitionProtocolID=".$acqID.") + fi.MriScanTypeID=".$acqID.") LEFT JOIN mri_violations_log mvl ON - (mvl.CandID = s.CandID AND mvl.Scan_type=".$acqID." + (mvl.CandID = s.CandID AND mvl.MriScanTypeID=".$acqID." AND mvl.PatientName LIKE CONCAT ('%', s.Visit_label,'%')) LEFT JOIN files_qcstatus qc ON (qc.FileID = fi.FileID) LEFT JOIN mri_upload mu ON (mu.SessionID = f.SessionID) "; @@ -286,7 +286,8 @@ class Imaging_QC extends \NDB_Menu_Filter $query_params = ['scan_type' => $scan_type]; $acq_IDs[$scan_type] = $db->pselectOne( - "SELECT ID FROM mri_scan_type WHERE Scan_type=:scan_type", + "SELECT MriScanTypeID FROM mri_scan_type + WHERE MriScanTypeName=:scan_type", $query_params ); if (substr("$scan_type", 0, 2) == "t1") { diff --git a/modules/mri_violations/jsx/protocolModal.js b/modules/mri_violations/jsx/protocolModal.js index f2c9a436419..8e3d542d1c5 100644 --- a/modules/mri_violations/jsx/protocolModal.js +++ b/modules/mri_violations/jsx/protocolModal.js @@ -137,7 +137,8 @@ function ProtocolViolationModal(props) { - ); + + ); } let protocolgroups = []; @@ -201,7 +202,7 @@ function ProtocolViolationModal(props) { curgroup.push( {protocol['Center_name']} {protocol['ScannerID']} - {protocol['Scan_type']} + {protocol['ScanType']} Series Description Regex: @@ -214,7 +215,7 @@ function ProtocolViolationModal(props) { curgroup.push( {protocol['Center_name']} {protocol['ScannerID']} - {protocol['Scan_type']} + {protocol['ScanType']} {showRange(protocol['TR_min'], protocol['TR_max'])} {showRange(protocol['TE_min'], protocol['TE_max'])} {showRange(protocol['TI_min'], protocol['TI_max'])} diff --git a/modules/mri_violations/php/mri_violations.class.inc b/modules/mri_violations/php/mri_violations.class.inc index 4eb99ecdcdb..e78b36842ca 100644 --- a/modules/mri_violations/php/mri_violations.class.inc +++ b/modules/mri_violations/php/mri_violations.class.inc @@ -86,20 +86,20 @@ class Mri_Violations extends \DataFrameworkMenu $protocols = $db->pselect( "SELECT p.ID, mpg.Name as 'Protocol Group', site.Name as Center_name, ScannerID, - s.Scan_type, TR_min, TR_max, TE_min, TE_max, TI_min, - TI_max, slice_thickness_min, slice_thickness_max, - xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, - zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, - zstep_min, zstep_max, time_min, time_max, + mst.MriScanTypeName as scan_type_name, TR_min, TR_max, TE_min, + TE_max, TI_min, TI_max, slice_thickness_min, + slice_thickness_max, xspace_min, xspace_max, yspace_min, + yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, + ystep_min, ystep_max, zstep_min, zstep_max, time_min, time_max, series_description_regex, image_type, PhaseEncodingDirection, EchoNumber FROM mri_protocol as p LEFT JOIN mri_protocol_group mpg ON (mpg.MriProtocolGroupID=p.MriProtocolGroupID) - LEFT JOIN mri_scan_type as s - ON p.Scan_type=s.ID + LEFT JOIN mri_scan_type as mst + ON p.MriScanTypeID=mst.MriScanTypeID LEFT JOIN psc site ON (p.CenterID=site.CenterID) - ORDER BY mpg.MriProtocolGroupID ASC, p.Scan_type ASC", + ORDER BY mpg.MriProtocolGroupID ASC, p.MriScanTypeID ASC", [] ); return [ diff --git a/modules/mri_violations/php/protocolcheckviolationprovisioner.class.inc b/modules/mri_violations/php/protocolcheckviolationprovisioner.class.inc index a643c646c74..7a8c7bb7d6e 100644 --- a/modules/mri_violations/php/protocolcheckviolationprovisioner.class.inc +++ b/modules/mri_violations/php/protocolcheckviolationprovisioner.class.inc @@ -19,18 +19,18 @@ class ProtocolCheckViolationProvisioner function __construct(string $seriesUID) { parent::__construct( - "SELECT + "SELECT l.PatientName, l.CandID, l.Visit_label, - m.Scan_type, + mst.MriScanTypeName AS ScanType, mpcg.Name, l.Severity, l.Header, l.Value, COALESCE(l.ValidRange, l.ValidRegex) FROM mri_violations_log l - LEFT JOIN mri_scan_type m ON (m.ID=l.Scan_type) + LEFT JOIN mri_scan_type mst ON (mst.MriScanTypeID=l.MriScanTypeID) LEFT JOIN mri_protocol_checks_group mpcg ON (mpcg.MriProtocolChecksGroupID = l.MriProtocolChecksGroupID) LEFT JOIN candidate c ON (l.CandID=c.CandID) diff --git a/modules/mri_violations/php/provisioner.class.inc b/modules/mri_violations/php/provisioner.class.inc index 5af2245970b..badc73d815b 100644 --- a/modules/mri_violations/php/provisioner.class.inc +++ b/modules/mri_violations/php/provisioner.class.inc @@ -85,7 +85,7 @@ class Provisioner extends \LORIS\Data\Provisioners\DBRowProvisioner s.ProjectID AS Project, s.CohortID AS Cohort, MincFile, - mri_scan_type.Scan_type, + mst.MriScanTypeName, 'Protocol Violation', SeriesUID, md5( @@ -103,7 +103,7 @@ class Provisioner extends \LORIS\Data\Provisioners\DBRowProvisioner mrl.CandID AS CandID, c.PSCID AS PSCID FROM mri_violations_log AS mrl - LEFT JOIN mri_scan_type ON (mri_scan_type.ID=mrl.Scan_type) + LEFT JOIN mri_scan_type mst ON (mst.MriScanTypeID=mrl.MriScanTypeID) LEFT JOIN violations_resolved ON ( violations_resolved.ExtID=mrl.LogID AND violations_resolved.TypeTable='mri_violations_log' @@ -114,7 +114,7 @@ class Provisioner extends \LORIS\Data\Provisioners\DBRowProvisioner ) LEFT JOIN psc p ON (p.CenterID = s.CenterID) GROUP BY PatientName, TimeRun, Project, Cohort, MincFile, - Scan_type, SeriesUID, Site, hash, Resolved, TarchiveID, + MriScanTypeName, SeriesUID, Site, hash, Resolved, TarchiveID, CandID, PSCID, PhaseEncodingDirection, EchoTime, EchoNumber UNION SELECT PatientName, diff --git a/modules/statistics/php/statistics_mri_site.class.inc b/modules/statistics/php/statistics_mri_site.class.inc index 21c469a60cb..a4a0f1765bc 100644 --- a/modules/statistics/php/statistics_mri_site.class.inc +++ b/modules/statistics/php/statistics_mri_site.class.inc @@ -102,7 +102,10 @@ class Statistics_Mri_Site extends Statistics_Site $DB = $this->loris->getDatabaseConnection(); $scan_types = iterator_to_array( - $DB->pselect("SELECT Scan_type from mri_scan_type", []) + $DB->pselect( + "SELECT MriScanTypeName AS ScanType from mri_scan_type", + [] + ) ); $where = "WHERE ("; $counter = 1; @@ -119,7 +122,7 @@ class Statistics_Mri_Site extends Statistics_Site $query = ''; switch ($issue) { case 'Tarchive_Missing': - $query = "SELECT DISTINCT f.CommentID as CommentID, + $query = "SELECT DISTINCT f.CommentID as CommentID, c.PSCID, s.ID as SessionID, s.CandID as CandID, s.Visit_label FROM flag f JOIN session s ON (f.SessionID=s.ID) @@ -177,7 +180,7 @@ class Statistics_Mri_Site extends Statistics_Site LEFT JOIN mri_parameter_form mpf ON (mpf.CommentID=f.CommentID) LEFT JOIN candidate c ON (c.CandID=s.CandID) - WHERE s.Active='Y' + WHERE s.Active='Y' AND c.Entity_type != 'Scanner' AND (f.ID IS NULL OR f.Data_entry <> 'Complete' OR diff --git a/modules/statistics/php/stats_mri.class.inc b/modules/statistics/php/stats_mri.class.inc index 94a2761434f..3d07be81180 100644 --- a/modules/statistics/php/stats_mri.class.inc +++ b/modules/statistics/php/stats_mri.class.inc @@ -309,15 +309,15 @@ class Stats_MRI extends \NDB_Form //GET SCAN TYPES $Scan_type_results = $DB->pselect( - "SELECT mst.ID, mst.Scan_type + "SELECT mst.MriScanTypeID, mst.MriScanTypeName FROM mri_scan_type mst - JOIN mri_protocol mp ON (mst.ID=mp.Scan_type)", + JOIN mri_protocol mp USING (MriScanTypeID)", [] ); $scan_types = []; foreach ($Scan_type_results as $row) { - $scan_types[$row['ID']] = $row['Scan_type']; + $scan_types[$row['MriScanTypeID']] = $row['MriScanTypeName']; } $scans_selected = []; diff --git a/php/libraries/Image.class.inc b/php/libraries/Image.class.inc index 0039275651b..ca0a7a9078b 100644 --- a/php/libraries/Image.class.inc +++ b/php/libraries/Image.class.inc @@ -55,7 +55,7 @@ class Image SELECT f.File as filelocation, f.OutputType as outputtype, - mst.Scan_type as acquisitionprotocol, + mst.MriScanTypeName as acquisitionprotocol, FileType as filetype, s.CenterID as centerid, c.Entity_type as entitytype @@ -66,7 +66,7 @@ class Image LEFT JOIN candidate c ON (s.CandID = c.CandID) LEFT JOIN mri_scan_type mst - ON (mst.ID = f.AcquisitionProtocolID) + ON (mst.MriScanTypeID = f.MriScanTypeID) WHERE f.FileID = :v_fileid ', ['v_fileid' => $fileid] diff --git a/php/libraries/MRIFile.class.inc b/php/libraries/MRIFile.class.inc index 18985fb0bc0..59c98467d75 100644 --- a/php/libraries/MRIFile.class.inc +++ b/php/libraries/MRIFile.class.inc @@ -112,13 +112,14 @@ class MRIFile */ function getAcquisitionProtocol(): ?string { - if (is_null($this->fileData['AcquisitionProtocolID'])) { + if (is_null($this->fileData['MriScanTypeID'])) { return null; } return \NDB_Factory::singleton()->database()->pselectOne( - 'SELECT Scan_type FROM mri_scan_type WHERE ID=:ProtoID', - ['ProtoID' => $this->fileData['AcquisitionProtocolID']] + 'SELECT MriScanTypeName FROM mri_scan_type + WHERE MriScanTypeID=:ID', + ['ID' => $this->fileData['MriScanTypeID']] ); } } diff --git a/php/libraries/Utility.class.inc b/php/libraries/Utility.class.inc index f6beac25bab..a1927a22e17 100644 --- a/php/libraries/Utility.class.inc +++ b/php/libraries/Utility.class.inc @@ -967,15 +967,15 @@ class Utility { $scan_types_DB = \NDB_Factory::singleton()->database()->pselect( - "SELECT ID, Scan_type - FROM mri_scan_type mri - JOIN files f ON (f.AcquisitionProtocolID=mri.ID)", + "SELECT MriScanTypeID, MriScanTypeName + FROM mri_scan_type JOIN files USING (MriScanTypeID)", [] ); $scan_types = []; foreach ($scan_types_DB as $scan_type) { - $scan_types[$scan_type['ID']] = $scan_type['Scan_type']; + $scan_types[$scan_type['MriScanTypeID']] + = $scan_type['MriScanTypeName']; } return $scan_types; @@ -1056,7 +1056,7 @@ class Utility $dxToUpdate = $DB->pselect( "SELECT cde.CandID, cde.DxEvolutionID - FROM candidate_diagnosis_evolution_rel cde + FROM candidate_diagnosis_evolution_rel cde JOIN diagnosis_evolution de USING (DxEvolutionID) JOIN session s ON (cde.CandID=s.CandID AND s.Visit_label=de.visitLabel) WHERE s.ID=:sid", diff --git a/raisinbread/RB_files/RB_files.sql b/raisinbread/RB_files/RB_files.sql index 24f2085bbf9..9f86a144e2e 100644 --- a/raisinbread/RB_files/RB_files.sql +++ b/raisinbread/RB_files/RB_files.sql @@ -1,316 +1,316 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `files`; LOCK TABLES `files` WRITE; -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (134,1053,'assembly/587630/V1/mri/native/demo_587630_V1_t1_001.mnc','1.3.12.2.1107.5.2.32.35008.2009052710234557661341584.0.0.0',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558633727,NULL,NULL,NULL,NULL,0,27,NULL,1,1,'2018-04-20'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (135,1053,'assembly/587630/V1/mri/native/demo_587630_V1_t2_001.mnc','1.3.12.2.1107.5.2.32.35008.2009052710301888858442230.0.0.0',0.499,NULL,NULL,'native','native',45,'mnc','cecile',1558633732,NULL,NULL,NULL,NULL,0,27,NULL,1,1,'2018-04-20'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (136,1053,'assembly/587630/V1/mri/native/demo_587630_V1_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35008.2009052710345172468142734.0.0.0',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558633737,NULL,NULL,NULL,NULL,0,27,NULL,1,1,'2018-04-20'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (137,2149,'assembly/676061/V4/mri/native/demo_676061_V4_t1_001.mnc','1.3.12.2.1107.5.2.32.35008.30000009052723063231200000164',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558635537,NULL,NULL,NULL,NULL,0,28,NULL,1,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (138,2149,'assembly/676061/V4/mri/native/demo_676061_V4_t2_001.mnc','1.3.12.2.1107.5.2.32.35008.30000009052723063231200000325',0.499,NULL,NULL,'native','native',45,'mnc','cecile',1558635541,NULL,NULL,NULL,NULL,0,28,NULL,1,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (139,2149,'assembly/676061/V4/mri/native/demo_676061_V4_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35008.30000009052723063231200000352',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558635545,NULL,NULL,NULL,NULL,0,28,NULL,1,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (140,2150,'assembly/676061/V5/mri/native/demo_676061_V5_t1_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081821331038813272724.0.0.0',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558635666,NULL,NULL,NULL,NULL,0,30,NULL,5,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (141,2150,'assembly/676061/V5/mri/native/demo_676061_V5_t2_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081821393982646073370.0.0.0',0.497,NULL,NULL,'native','native',45,'mnc','cecile',1558635669,NULL,NULL,NULL,NULL,0,30,NULL,5,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (142,2150,'assembly/676061/V5/mri/native/demo_676061_V5_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081821440967619774016.0.0.0',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558635674,NULL,NULL,NULL,NULL,1,30,NULL,5,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (143,2150,'assembly/676061/V5/mri/native/demo_676061_V5_fMRI_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081821510619907788323.0.0.0',0.027,NULL,NULL,'native','native',40,'mnc','cecile',1558635679,NULL,NULL,NULL,NULL,0,30,NULL,5,1,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (144,2150,'assembly/676061/V5/mri/native/demo_676061_V5_fMRI_002.mnc','1.3.12.2.1107.5.2.32.35008.2010081821572753238601070.0.0.0',0.027,NULL,NULL,'native','native',40,'mnc','cecile',1558635683,NULL,NULL,NULL,NULL,0,30,NULL,5,2,'2018-04-06'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (145,2148,'assembly/676061/V3/mri/native/demo_676061_V3_t1_001.mnc','1.3.12.2.1107.5.2.32.35008.2011101920024513181414914.0.0.0',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558635831,NULL,NULL,NULL,NULL,0,29,NULL,5,1,'2018-03-03'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (146,2148,'assembly/676061/V3/mri/native/demo_676061_V3_t2_001.mnc','1.3.12.2.1107.5.2.32.35008.2011101920090955962315560.0.0.0',0.497,NULL,NULL,'native','native',45,'mnc','cecile',1558635836,NULL,NULL,NULL,NULL,0,29,NULL,5,1,'2018-03-03'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (147,2148,'assembly/676061/V3/mri/native/demo_676061_V3_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35008.2011101920133531241116206.0.0.0',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558635843,NULL,NULL,NULL,NULL,0,29,NULL,5,1,'2018-03-03'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (148,2148,'assembly/676061/V3/mri/native/demo_676061_V3_fMRI_001.mnc','1.3.12.2.1107.5.2.32.35008.2011101920214633918130876.0.0.0',0.027,NULL,NULL,'native','native',40,'mnc','cecile',1558635857,NULL,NULL,NULL,NULL,0,29,NULL,5,1,'2018-03-03'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (149,2148,'assembly/676061/V3/mri/native/demo_676061_V3_fMRI_002.mnc','1.3.12.2.1107.5.2.32.35008.2011101920273850146943623.0.0.0',0.027,NULL,NULL,'native','native',40,'mnc','cecile',1558635861,NULL,NULL,NULL,NULL,0,29,NULL,5,2,'2018-03-03'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (150,2148,'assembly/676061/V3/mri/native/demo_676061_V3_dwi65_001.mnc','1.3.12.2.1107.5.2.32.35008.2011101920334850827756370.0.0.0',0.103,NULL,NULL,'native','native',65,'mnc','cecile',1558635867,NULL,NULL,NULL,NULL,0,29,NULL,5,1,'2018-03-03'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (151,2141,'assembly/115788/V3/mri/native/demo_115788_V3_t1_001.mnc','1.3.12.2.1107.5.2.32.35140.2008062618041745845693489.0.0.0',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558635980,NULL,NULL,NULL,NULL,0,31,NULL,3,1,'2018-04-20'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (152,2141,'assembly/115788/V3/mri/native/demo_115788_V3_t2_001.mnc','1.3.12.2.1107.5.2.32.35140.2008062618111889986494662.0.0.0',0.499,NULL,NULL,'native','native',45,'mnc','cecile',1558635983,NULL,NULL,NULL,NULL,0,31,NULL,3,1,'2018-04-20'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (153,2141,'assembly/115788/V3/mri/native/demo_115788_V3_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35140.2008062618172320916595308.0.0.0',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558635988,NULL,NULL,NULL,NULL,0,31,NULL,3,1,'2018-04-20'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (154,2142,'assembly/475906/V1/mri/native/demo_475906_V1_t1_001.mnc','1.3.12.2.1107.5.2.32.35140.2009052818025478074186630.0.0.0',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558636138,NULL,NULL,NULL,NULL,0,33,NULL,3,1,'2018-01-01'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (155,2142,'assembly/475906/V1/mri/native/demo_475906_V1_t2_001.mnc','1.3.12.2.1107.5.2.32.35140.200905281809277943587276.0.0.0',0.499,NULL,NULL,'native','native',45,'mnc','cecile',1558636141,NULL,NULL,NULL,NULL,0,33,NULL,3,1,'2018-01-01'); -INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `AcquisitionProtocolID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (156,2142,'assembly/475906/V1/mri/native/demo_475906_V1_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35140.2009052818135661242187860.0.0.0',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558636145,NULL,NULL,NULL,NULL,0,33,NULL,3,1,'2018-01-01'); 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+INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `MriScanTypeID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (440,2145,'assembly/676061/V1/mri/native/demo_676061_V1_t1_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081720232532169233614.0.0.0',0.00316,NULL,NULL,'native','native',44,'mnc','cecile',1558709277,NULL,NULL,NULL,NULL,0,63,NULL,5,1,'2018-01-01'); +INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `MriScanTypeID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (441,2145,'assembly/676061/V1/mri/native/demo_676061_V1_t2_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081720295184960234260.0.0.0',0.497,NULL,NULL,'native','native',45,'mnc','cecile',1558709289,NULL,NULL,NULL,NULL,0,63,NULL,5,1,'2018-01-01'); +INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `MriScanTypeID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (442,2145,'assembly/676061/V1/mri/native/demo_676061_V1_dwi25_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081720343224353634906.0.0.0',0.102,NULL,NULL,'native','native',66,'mnc','cecile',1558709299,NULL,NULL,NULL,NULL,1,63,NULL,5,1,'2018-01-01'); +INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `MriScanTypeID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (443,2145,'assembly/676061/V1/mri/native/demo_676061_V1_fMRI_001.mnc','1.3.12.2.1107.5.2.32.35008.2010081720415977405449710.0.0.0',0.027,NULL,NULL,'native','native',40,'mnc','cecile',1558709312,NULL,NULL,NULL,NULL,0,63,NULL,5,1,'2018-01-01'); +INSERT INTO `files` (`FileID`, `SessionID`, `File`, `SeriesUID`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `CoordinateSpace`, `OutputType`, `MriScanTypeID`, `FileType`, `InsertedByUserID`, `InsertTime`, `SourcePipeline`, `PipelineDate`, `SourceFileID`, `ProcessProtocolID`, `Caveat`, `TarchiveSource`, `HrrtArchiveID`, `ScannerID`, `AcqOrderPerModality`, `AcquisitionDate`) VALUES (444,2145,'assembly/676061/V1/mri/native/demo_676061_V1_fMRI_002.mnc','1.3.12.2.1107.5.2.32.35008.2010081720474471621362457.0.0.0',0.027,NULL,NULL,'native','native',40,'mnc','cecile',1558709324,NULL,NULL,NULL,NULL,0,63,NULL,5,2,'2018-01-01'); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_mri_protocol.sql b/raisinbread/RB_files/RB_mri_protocol.sql index 66ee97d679f..83ae3b4a8e7 100644 --- a/raisinbread/RB_files/RB_mri_protocol.sql +++ b/raisinbread/RB_files/RB_mri_protocol.sql @@ -1,12 +1,12 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `mri_protocol`; LOCK TABLES `mri_protocol` WRITE; -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1004,NULL,NULL,63,347.0000,667.0000,5.1900,7.6500,NULL,NULL,4.0000,4.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1005,NULL,NULL,44,2400.0000,2400.0000,2.0000,4.0000,1200.0000,1200.0000,0.9700,1.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1006,NULL,NULL,45,3200.0000,3200.0000,384.0000,528.0000,NULL,NULL,1.0000,1.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1007,NULL,NULL,40,2500.0000,2500.0000,27.0000,27.0000,NULL,NULL,4.0000,4.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,130,130,NULL,NULL,NULL,NULL,1); -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1008,NULL,NULL,66,10404.0000,14600.0000,88.0000,102.0000,NULL,NULL,2.0000,3.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,25,27,NULL,NULL,NULL,NULL,1); -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1009,NULL,NULL,65,10200.0000,13000.0000,88.0000,105.0000,NULL,NULL,2.0000,2.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,65,66,NULL,NULL,NULL,NULL,1); -INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `Scan_type`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1010,NULL,NULL,64,489.0000,489.0000,3.1900,5.6500,NULL,NULL,4.0000,4.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1004,NULL,NULL,63,347.0000,667.0000,5.1900,7.6500,NULL,NULL,4.0000,4.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1005,NULL,NULL,44,2400.0000,2400.0000,2.0000,4.0000,1200.0000,1200.0000,0.9700,1.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1006,NULL,NULL,45,3200.0000,3200.0000,384.0000,528.0000,NULL,NULL,1.0000,1.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1007,NULL,NULL,40,2500.0000,2500.0000,27.0000,27.0000,NULL,NULL,4.0000,4.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,130,130,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1008,NULL,NULL,66,10404.0000,14600.0000,88.0000,102.0000,NULL,NULL,2.0000,3.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,25,27,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1009,NULL,NULL,65,10200.0000,13000.0000,88.0000,105.0000,NULL,NULL,2.0000,2.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,65,66,NULL,NULL,NULL,NULL,1); +INSERT INTO `mri_protocol` (`ID`, `CenterID`, `ScannerID`, `MriScanTypeID`, `TR_min`, `TR_max`, `TE_min`, `TE_max`, `TI_min`, `TI_max`, `slice_thickness_min`, `slice_thickness_max`, `xspace_min`, `xspace_max`, `yspace_min`, `yspace_max`, `zspace_min`, `zspace_max`, `xstep_min`, `xstep_max`, `ystep_min`, `ystep_max`, `zstep_min`, `zstep_max`, `time_min`, `time_max`, `image_type`, `series_description_regex`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolGroupID`) VALUES (1010,NULL,NULL,64,489.0000,489.0000,3.1900,5.6500,NULL,NULL,4.0000,4.0000,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,1); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_mri_protocol_checks.sql b/raisinbread/RB_files/RB_mri_protocol_checks.sql index 4afd3a88cb6..3fd3ba62f3f 100644 --- a/raisinbread/RB_files/RB_mri_protocol_checks.sql +++ b/raisinbread/RB_files/RB_mri_protocol_checks.sql @@ -1,18 +1,18 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `mri_protocol_checks`; LOCK TABLES `mri_protocol_checks` WRITE; -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (1,45,'warning','echo_time',0.4900,0.5280,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (2,66,'warning','repetition_time',12.8000,12.8000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (3,66,'warning','repetition_time',13.3000,13.3000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (4,66,'warning','echo_time',0.1020,0.1020,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (5,65,'warning','repetition_time',11.1000,11.1000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (6,65,'warning','repetition_time',11.2000,11.2000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (7,65,'warning','echo_time',0.1020,0.1030,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (8,66,'warning','slice_thickness',2.0000,2.0000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (9,66,'warning','time',26.0000,26.0000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (10,65,'warning','time',65.0000,65.0000,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (11,63,'warning','repetition_time',0.6670,0.6670,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (12,44,'warning','echo_time',0.0030,0.0040,NULL,1); -INSERT INTO `mri_protocol_checks` (`ID`, `Scan_type`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (13,44,'warning','slice_thickness',1.0000,1.0000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (1,45,'warning','echo_time',0.4900,0.5280,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (2,66,'warning','repetition_time',12.8000,12.8000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (3,66,'warning','repetition_time',13.3000,13.3000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (4,66,'warning','echo_time',0.1020,0.1020,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (5,65,'warning','repetition_time',11.1000,11.1000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (6,65,'warning','repetition_time',11.2000,11.2000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (7,65,'warning','echo_time',0.1020,0.1030,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (8,66,'warning','slice_thickness',2.0000,2.0000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (9,66,'warning','time',26.0000,26.0000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (10,65,'warning','time',65.0000,65.0000,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (11,63,'warning','repetition_time',0.6670,0.6670,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (12,44,'warning','echo_time',0.0030,0.0040,NULL,1); +INSERT INTO `mri_protocol_checks` (`ID`, `MriScanTypeID`, `Severity`, `Header`, `ValidMin`, `ValidMax`, `ValidRegex`, `MriProtocolChecksGroupID`) VALUES (13,44,'warning','slice_thickness',1.0000,1.0000,NULL,1); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_mri_scan_type.sql b/raisinbread/RB_files/RB_mri_scan_type.sql index 12abd24f574..d9c16ba9ae9 100644 --- a/raisinbread/RB_files/RB_mri_scan_type.sql +++ b/raisinbread/RB_files/RB_mri_scan_type.sql @@ -1,47 +1,47 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `mri_scan_type`; LOCK TABLES `mri_scan_type` WRITE; -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (40,'fMRI'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (41,'flair'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (44,'t1'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (45,'t2'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (46,'pd'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (47,'mrs'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (48,'dti'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (49,'t1relx'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (50,'dct2e1'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (51,'dct2e2'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (52,'scout'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (53,'tal_msk'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (54,'cocosco_cls'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (55,'clean_cls'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (56,'em_cls'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (57,'seg'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (58,'white_matter'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (59,'gray_matter'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (60,'csf_matter'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (61,'nlr_masked'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (62,'pve'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (63,'fieldmapBOLD'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (64,'fieldmapDWI'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (65,'dwi65'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (66,'dwi25'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (999,'unknown'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1000,'NA'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1001,'DTIPrepReg'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1002,'DTIPrepNoReg'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1003,'DTIPrepDTIColorFA'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1004,'DTIPrepDTIFA'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1005,'DTIPrepDTIMD'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1006,'DTIPrepBaseline'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1007,'DTPrepIDWI'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1008,'DTIPrepDTI'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1009,'DTIPrepBetMask'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1010,'DTIPrepQCReport'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1011,'DTIPrepXMLQCReport'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1012,'DTIPrepXMLProtocol'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1013,'-defaced'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1014,'t2-defaced'); -INSERT INTO `mri_scan_type` (`ID`, `Scan_type`) VALUES (1015,'t1-defaced'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (40,'fMRI'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (41,'flair'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (44,'t1'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (45,'t2'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (46,'pd'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (47,'mrs'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (48,'dti'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (49,'t1relx'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (50,'dct2e1'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (51,'dct2e2'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (52,'scout'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (53,'tal_msk'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (54,'cocosco_cls'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (55,'clean_cls'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (56,'em_cls'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (57,'seg'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (58,'white_matter'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (59,'gray_matter'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (60,'csf_matter'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (61,'nlr_masked'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (62,'pve'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (63,'fieldmapBOLD'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (64,'fieldmapDWI'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (65,'dwi65'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (66,'dwi25'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (999,'unknown'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1000,'NA'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1001,'DTIPrepReg'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1002,'DTIPrepNoReg'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1003,'DTIPrepDTIColorFA'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1004,'DTIPrepDTIFA'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1005,'DTIPrepDTIMD'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1006,'DTIPrepBaseline'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1007,'DTPrepIDWI'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1008,'DTIPrepDTI'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1009,'DTIPrepBetMask'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1010,'DTIPrepQCReport'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1011,'DTIPrepXMLQCReport'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1012,'DTIPrepXMLProtocol'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1013,'-defaced'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1014,'t2-defaced'); +INSERT INTO `mri_scan_type` (`MriScanTypeID`, `MriScanTypeName`) VALUES (1015,'t1-defaced'); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_mri_violations_log.sql b/raisinbread/RB_files/RB_mri_violations_log.sql index 1835cdf36f8..8da65e77431 100644 --- a/raisinbread/RB_files/RB_mri_violations_log.sql +++ b/raisinbread/RB_files/RB_mri_violations_log.sql @@ -1,114 +1,114 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `mri_violations_log`; LOCK TABLES `mri_violations_log` WRITE; -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (4,'2019-05-23 14:21:13','1.3.12.2.1107.5.2.32.35008.2010081821440967619774016.0.0.0',30,'assembly/676061/V5/mri/native/demo_676061_V5_dwi25_001.mnc','DCC292_676061_V5',676061,'V5',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (5,'2019-05-23 14:30:39','1.3.12.2.1107.5.2.32.35140.2010011214522830227313535.0.0.0',34,'assembly/475906/V2/mri/native/demo_475906_V2_dwi25_001.mnc','DCC422_475906_V2',475906,'V2',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (6,'2019-05-23 14:33:45','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002259',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_001.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (7,'2019-05-23 14:33:47','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002298',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_002.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (8,'2019-05-23 14:38:55','1.3.12.2.1107.5.2.32.35140.30010014031117535360900012620',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_001.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (9,'2019-05-23 14:38:57','1.3.12.2.1107.5.2.32.35140.30010014031117535360900012663',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_002.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (10,'2019-05-23 14:39:34','1.3.12.2.1107.5.2.32.35140.30010014031117535360900016892',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_006.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (11,'2019-05-23 14:39:36','1.3.12.2.1107.5.2.32.35140.30010014031117535360900016933',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_007.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (12,'2019-05-23 14:45:02','1.3.12.2.1107.5.2.32.35140.2012101218492748827554841.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_001.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (13,'2019-05-23 14:45:04','1.3.12.2.1107.5.2.32.35140.2012101218492748830254843.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_002.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (14,'2019-05-23 14:45:30','1.3.12.2.1107.5.2.32.35140.2012101219033142108075906.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_003.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (15,'2019-05-23 14:45:32','1.3.12.2.1107.5.2.32.35140.2012101219033142110675908.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_004.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (16,'2019-05-23 14:49:47','1.3.12.2.1107.5.2.32.35140.30010015031318052567100052943',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_001.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (17,'2019-05-23 14:49:50','1.3.12.2.1107.5.2.32.35140.30010015031318052567100052986',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_002.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (18,'2019-05-23 14:50:14','1.3.12.2.1107.5.2.32.35140.30010015031318052567100057197',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_006.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (19,'2019-05-23 14:50:16','1.3.12.2.1107.5.2.32.35140.30010015031318052567100057238',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_007.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (20,'2019-05-23 14:54:22','1.3.12.2.1107.5.2.32.35140.2012101219241815691479077.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_001.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (21,'2019-05-23 14:54:24','1.3.12.2.1107.5.2.32.35140.2012101219241815694179079.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_002.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (22,'2019-05-23 14:54:58','1.3.12.2.1107.5.2.32.35140.2012101219423723861626780.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_003.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (23,'2019-05-23 14:55:00','1.3.12.2.1107.5.2.32.35140.2012101219423723864226782.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_004.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (24,'2019-05-23 14:55:26','1.3.12.2.1107.5.2.32.35140.2012101219564114092147845.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_005.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (25,'2019-05-23 14:55:28','1.3.12.2.1107.5.2.32.35140.2012101219564114095347847.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_006.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (26,'2019-05-23 17:51:33','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_002.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (27,'2019-05-23 17:51:35','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_002.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (28,'2019-05-23 17:51:37','1.3.12.2.1107.5.2.32.35182.2011081519061874064159436.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_003.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (29,'2019-05-23 17:57:22','1.3.12.2.1107.5.2.32.35056.2010112515325672509961057.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi65_001.mnc','OTT170_300170_V1',300170,'V1',NULL,65,'warning','echo_time','0.1045','0.1020-0.1030','NULL',0.1045,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (30,'2019-05-23 17:57:22','1.3.12.2.1107.5.2.32.35056.2010112515325672509961057.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi65_001.mnc','OTT170_300170_V1',300170,'V1',NULL,65,'warning','repetition_time','12.963','11.1000-11.1000,11.2000-11.2000','NULL',0.1045,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (31,'2019-05-23 17:57:29','1.3.12.2.1107.5.2.32.35056.2010112515484738005880971.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi25_001.mnc','OTT170_300170_V1',300170,'V1',NULL,66,'warning','time','27','26.0000-26.0000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (32,'2019-05-23 17:57:29','1.3.12.2.1107.5.2.32.35056.2010112515484738005880971.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi25_001.mnc','OTT170_300170_V1',300170,'V1',NULL,66,'warning','slice_thickness','2.2000000476837','2.0000-2.0000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (33,'2019-05-23 17:57:43','1.3.12.2.1107.5.2.32.35056.2010112515553969904492389.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_fieldmapBOLD_001.mnc','OTT170_300170_V1',300170,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (34,'2019-05-23 17:57:44','1.3.12.2.1107.5.2.32.35056.2010112515553969907692391.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_fieldmapBOLD_002.mnc','OTT170_300170_V1',300170,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (35,'2019-05-23 18:00:27','1.3.12.2.1107.5.2.32.35056.2010112516192384752995318.0.0.0',49,'assembly/300181/V2/mri/native/demo_300181_V2_dwi25_001.mnc','OTT181_300181_V2',300181,'V2',NULL,66,'warning','time','27','26.0000-26.0000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (36,'2019-05-23 18:00:27','1.3.12.2.1107.5.2.32.35056.2010112516192384752995318.0.0.0',49,'assembly/300181/V2/mri/native/demo_300181_V2_dwi25_001.mnc','OTT181_300181_V2',300181,'V2',NULL,66,'warning','slice_thickness','2.2000000476837','2.0000-2.0000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (37,'2019-05-23 18:05:02','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_002.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (38,'2019-05-23 18:05:04','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_002.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (39,'2019-05-23 18:05:06','1.3.12.2.1107.5.2.32.35182.2012091118092030120514602.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_003.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (40,'2019-05-23 18:05:20','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_005.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (41,'2019-05-23 18:05:22','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_005.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (42,'2019-05-23 18:05:24','1.3.12.2.1107.5.2.32.35182.2012091118154975644940588.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_006.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (43,'2019-05-23 18:11:12','1.3.12.2.1107.5.2.32.35248.2015081323444190204268993.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_004.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (44,'2019-05-23 18:11:20','1.3.12.2.1107.5.2.32.35248.2015081323444190207368995.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_005.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (45,'2019-05-23 18:11:37','1.3.12.2.1107.5.2.32.35248.2015081323525130060281318.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_006.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (46,'2019-05-23 18:11:43','1.3.12.2.1107.5.2.32.35248.2015081323525130063381320.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_007.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (47,'2019-05-23 18:17:16','1.3.12.2.1107.5.2.32.35248.2017100419003887080086069.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_004.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (48,'2019-05-23 18:17:18','1.3.12.2.1107.5.2.32.35248.2017100419003887082486071.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_005.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (49,'2019-05-23 18:17:35','1.3.12.2.1107.5.2.32.35248.2017100419082512308998394.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_006.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (50,'2019-05-23 18:17:41','1.3.12.2.1107.5.2.32.35248.2017100419082512311398396.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_007.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (51,'2019-05-23 18:23:30','1.3.12.2.1107.5.2.32.35248.2015081319591998144579690.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_004.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (52,'2019-05-23 18:23:32','1.3.12.2.1107.5.2.32.35248.2015081319591998147479692.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_005.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (53,'2019-05-23 18:23:50','1.3.12.2.1107.5.2.32.35248.201508132007307229692015.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_006.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (54,'2019-05-23 18:23:51','1.3.12.2.1107.5.2.32.35248.201508132007307232692017.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_007.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (55,'2019-05-23 18:26:33','1.3.12.2.1107.5.2.32.35412.2010011213140939401802789.0.0.0',55,'assembly/400162/V6/mri/native/demo_400162_V6_dwi25_001.mnc','ROM162_400162_V6',400162,'V6',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (56,'2019-05-23 18:29:02','1.3.12.2.1107.5.2.32.35412.2010091413482795437031334.0.0.0',56,'assembly/400168/V2/mri/native/demo_400168_V2_dwi25_001.mnc','ROM168_400168_V2',400168,'V2',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (57,'2019-05-23 18:29:48','1.3.12.2.1107.5.2.32.35248.2017100420055548450374372.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_004.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (58,'2019-05-23 18:29:51','1.3.12.2.1107.5.2.32.35248.2017100420055548453474374.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_005.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (59,'2019-05-23 18:30:04','1.3.12.2.1107.5.2.32.35248.2017100420133955621486697.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_006.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); 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-INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (62,'2019-05-23 18:33:59','1.3.12.2.1107.5.2.32.35412.2011102016201854454305237.0.0.0',57,'assembly/400181/V6/mri/native/demo_400181_V6_fieldmapBOLD_001.mnc','ROM181_400181_V6',400181,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (63,'2019-05-23 18:34:02','1.3.12.2.1107.5.2.32.35412.2011102016201854456605239.0.0.0',57,'assembly/400181/V6/mri/native/demo_400181_V6_fieldmapBOLD_002.mnc','ROM181_400181_V6',400181,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (64,'2019-05-23 18:36:03','1.3.12.2.1107.5.2.32.35412.201210111648092321881038.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_001.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (65,'2019-05-23 18:36:05','1.3.12.2.1107.5.2.32.35412.201210111648092323981040.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_002.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (66,'2019-05-23 18:36:13','1.3.12.2.1107.5.2.32.35412.2012101116555052436094929.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_003.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (67,'2019-05-23 18:36:15','1.3.12.2.1107.5.2.32.35412.2012101116555052438194931.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_004.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (68,'2019-05-23 18:36:27','1.3.12.2.1107.5.2.32.35412.2012101117073992691129129.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_005.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (69,'2019-05-23 18:36:29','1.3.12.2.1107.5.2.32.35412.2012101117073992695029131.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_006.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (70,'2019-05-23 18:36:41','1.3.12.2.1107.5.2.32.35412.2012101117214497841150194.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_007.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (71,'2019-05-23 18:36:44','1.3.12.2.1107.5.2.32.35412.2012101117214497843450196.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_008.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (72,'2019-05-23 18:38:38','1.3.12.2.1107.5.2.32.35412.2013121311111335569711228.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_001.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (73,'2019-05-23 18:38:40','1.3.12.2.1107.5.2.32.35412.2013121311111335572611230.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_002.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (74,'2019-05-23 18:38:43','1.3.12.2.1107.5.2.32.35412.2013121311122119894211656.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_dwi25_001.mnc','ROM221_400221_V5',400221,'V5',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (75,'2019-05-23 18:41:12','1.3.12.2.1107.5.2.32.35412.201001121337087991520153.0.0.0',61,'assembly/400261/V6/mri/native/demo_400261_V6_dwi25_001.mnc','ROM261_400261_V6',400261,'V6',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (76,'2019-05-23 18:41:29','1.3.12.2.1107.5.2.32.35412.2014071408265679232903659.0.0.0',60,'assembly/400248/V6/mri/native/demo_400248_V6_fieldmapBOLD_001.mnc','ROM248_400248_V6',400248,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (77,'2019-05-23 18:41:31','1.3.12.2.1107.5.2.32.35412.2014071408265679240003661.0.0.0',60,'assembly/400248/V6/mri/native/demo_400248_V6_fieldmapBOLD_002.mnc','ROM248_400248_V6',400248,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (78,'2019-05-23 18:43:55','1.3.12.2.1107.5.2.32.35412.2010091414245345068889790.0.0.0',62,'assembly/400300/V1/mri/native/demo_400300_V1_dwi25_001.mnc','ROM300_400300_V1',400300,'V1',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (79,'2019-05-24 10:48:19','1.3.12.2.1107.5.2.32.35008.2010081720343224353634906.0.0.0',63,'assembly/676061/V1/mri/native/demo_676061_V1_dwi25_001.mnc','DCC292_676061_V1',676061,'V1',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (80,'2019-05-28 10:22:23','1.3.12.2.1107.5.2.32.35008.2010081720343224353634906.0.0.0',63,'assembly/676061/V1/mri/native/demo_676061_V1_dwi25_001.mnc','DCC292_676061_V1',676061,'V1',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (81,'2019-05-28 10:22:48','1.3.12.2.1107.5.2.32.35008.2010081821440967619774016.0.0.0',30,'assembly/676061/V5/mri/native/demo_676061_V5_dwi25_001.mnc','DCC292_676061_V5',676061,'V5',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (82,'2019-05-28 10:23:18','1.3.12.2.1107.5.2.32.35140.2010011214522830227313535.0.0.0',34,'assembly/475906/V2/mri/native/demo_475906_V2_dwi25_001.mnc','DCC422_475906_V2',475906,'V2',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (83,'2019-05-28 10:23:24','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002259',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_001.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (84,'2019-05-28 10:23:24','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002298',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_002.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (85,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101218492748827554841.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_001.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (86,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101218492748830254843.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_002.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (87,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101219033142108075906.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_003.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (88,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101219033142110675908.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_004.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (89,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219241815691479077.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_001.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (90,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219241815694179079.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_002.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (91,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219423723861626780.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_003.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (92,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219423723864226782.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_004.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (93,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219564114092147845.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_005.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); 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-INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (96,'2019-05-28 10:24:09','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_002.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (97,'2019-05-28 10:24:09','1.3.12.2.1107.5.2.32.35182.2011081519061874064159436.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_003.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (98,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_001.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00519,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (99,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_002.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (100,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118092030120514602.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_003.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (101,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_004.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00519,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (102,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_005.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (103,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118154975644940588.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_006.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (104,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323444190204268993.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_004.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (105,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323444190207368995.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_005.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (106,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323525130060281318.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_006.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (107,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323525130063381320.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_007.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (108,'2019-05-28 10:25:04','1.3.12.2.1107.5.2.32.35412.2010011213140939401802789.0.0.0',55,'assembly/400162/V6/mri/native/demo_400162_V6_dwi25_001.mnc','ROM162_400162_V6',400162,'V6',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (109,'2019-05-28 10:25:22','1.3.12.2.1107.5.2.32.35412.2013121311111335569711228.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_001.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (110,'2019-05-28 10:25:22','1.3.12.2.1107.5.2.32.35412.2013121311111335572611230.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_002.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (111,'2019-05-28 10:25:22','1.3.12.2.1107.5.2.32.35412.2013121311122119894211656.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_dwi25_001.mnc','ROM221_400221_V5',400221,'V5',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); -INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `Scan_type`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (112,'2019-05-28 10:25:31','1.3.12.2.1107.5.2.32.35412.201001121337087991520153.0.0.0',61,'assembly/400261/V6/mri/native/demo_400261_V6_dwi25_001.mnc','ROM261_400261_V6',400261,'V6',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (4,'2019-05-23 14:21:13','1.3.12.2.1107.5.2.32.35008.2010081821440967619774016.0.0.0',30,'assembly/676061/V5/mri/native/demo_676061_V5_dwi25_001.mnc','DCC292_676061_V5',676061,'V5',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (5,'2019-05-23 14:30:39','1.3.12.2.1107.5.2.32.35140.2010011214522830227313535.0.0.0',34,'assembly/475906/V2/mri/native/demo_475906_V2_dwi25_001.mnc','DCC422_475906_V2',475906,'V2',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (6,'2019-05-23 14:33:45','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002259',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_001.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (7,'2019-05-23 14:33:47','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002298',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_002.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (8,'2019-05-23 14:38:55','1.3.12.2.1107.5.2.32.35140.30010014031117535360900012620',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_001.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (9,'2019-05-23 14:38:57','1.3.12.2.1107.5.2.32.35140.30010014031117535360900012663',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_002.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (10,'2019-05-23 14:39:34','1.3.12.2.1107.5.2.32.35140.30010014031117535360900016892',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_006.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (11,'2019-05-23 14:39:36','1.3.12.2.1107.5.2.32.35140.30010014031117535360900016933',36,'assembly/475906/V5/mri/native/demo_475906_V5_fieldmapBOLD_007.mnc','DCC422_475906_V5',475906,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (12,'2019-05-23 14:45:02','1.3.12.2.1107.5.2.32.35140.2012101218492748827554841.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_001.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (13,'2019-05-23 14:45:04','1.3.12.2.1107.5.2.32.35140.2012101218492748830254843.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_002.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (14,'2019-05-23 14:45:30','1.3.12.2.1107.5.2.32.35140.2012101219033142108075906.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_003.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (15,'2019-05-23 14:45:32','1.3.12.2.1107.5.2.32.35140.2012101219033142110675908.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_004.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (16,'2019-05-23 14:49:47','1.3.12.2.1107.5.2.32.35140.30010015031318052567100052943',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_001.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (17,'2019-05-23 14:49:50','1.3.12.2.1107.5.2.32.35140.30010015031318052567100052986',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_002.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (18,'2019-05-23 14:50:14','1.3.12.2.1107.5.2.32.35140.30010015031318052567100057197',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_006.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (19,'2019-05-23 14:50:16','1.3.12.2.1107.5.2.32.35140.30010015031318052567100057238',39,'assembly/947103/V6/mri/native/demo_947103_V6_fieldmapBOLD_007.mnc','DCC702_947103_V6',947103,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (20,'2019-05-23 14:54:22','1.3.12.2.1107.5.2.32.35140.2012101219241815691479077.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_001.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (21,'2019-05-23 14:54:24','1.3.12.2.1107.5.2.32.35140.2012101219241815694179079.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_002.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (22,'2019-05-23 14:54:58','1.3.12.2.1107.5.2.32.35140.2012101219423723861626780.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_003.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (23,'2019-05-23 14:55:00','1.3.12.2.1107.5.2.32.35140.2012101219423723864226782.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_004.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (24,'2019-05-23 14:55:26','1.3.12.2.1107.5.2.32.35140.2012101219564114092147845.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_005.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (25,'2019-05-23 14:55:28','1.3.12.2.1107.5.2.32.35140.2012101219564114095347847.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_006.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (26,'2019-05-23 17:51:33','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_002.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (27,'2019-05-23 17:51:35','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_002.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (28,'2019-05-23 17:51:37','1.3.12.2.1107.5.2.32.35182.2011081519061874064159436.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_003.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (29,'2019-05-23 17:57:22','1.3.12.2.1107.5.2.32.35056.2010112515325672509961057.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi65_001.mnc','OTT170_300170_V1',300170,'V1',NULL,65,'warning','echo_time','0.1045','0.1020-0.1030','NULL',0.1045,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (30,'2019-05-23 17:57:22','1.3.12.2.1107.5.2.32.35056.2010112515325672509961057.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi65_001.mnc','OTT170_300170_V1',300170,'V1',NULL,65,'warning','repetition_time','12.963','11.1000-11.1000,11.2000-11.2000','NULL',0.1045,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (31,'2019-05-23 17:57:29','1.3.12.2.1107.5.2.32.35056.2010112515484738005880971.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi25_001.mnc','OTT170_300170_V1',300170,'V1',NULL,66,'warning','time','27','26.0000-26.0000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (32,'2019-05-23 17:57:29','1.3.12.2.1107.5.2.32.35056.2010112515484738005880971.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_dwi25_001.mnc','OTT170_300170_V1',300170,'V1',NULL,66,'warning','slice_thickness','2.2000000476837','2.0000-2.0000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (33,'2019-05-23 17:57:43','1.3.12.2.1107.5.2.32.35056.2010112515553969904492389.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_fieldmapBOLD_001.mnc','OTT170_300170_V1',300170,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (34,'2019-05-23 17:57:44','1.3.12.2.1107.5.2.32.35056.2010112515553969907692391.0.0.0',48,'assembly/300170/V1/mri/native/demo_300170_V1_fieldmapBOLD_002.mnc','OTT170_300170_V1',300170,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (35,'2019-05-23 18:00:27','1.3.12.2.1107.5.2.32.35056.2010112516192384752995318.0.0.0',49,'assembly/300181/V2/mri/native/demo_300181_V2_dwi25_001.mnc','OTT181_300181_V2',300181,'V2',NULL,66,'warning','time','27','26.0000-26.0000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (36,'2019-05-23 18:00:27','1.3.12.2.1107.5.2.32.35056.2010112516192384752995318.0.0.0',49,'assembly/300181/V2/mri/native/demo_300181_V2_dwi25_001.mnc','OTT181_300181_V2',300181,'V2',NULL,66,'warning','slice_thickness','2.2000000476837','2.0000-2.0000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (37,'2019-05-23 18:05:02','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_002.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (38,'2019-05-23 18:05:04','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_002.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (39,'2019-05-23 18:05:06','1.3.12.2.1107.5.2.32.35182.2012091118092030120514602.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_003.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (40,'2019-05-23 18:05:20','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_005.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (41,'2019-05-23 18:05:22','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_005.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (42,'2019-05-23 18:05:24','1.3.12.2.1107.5.2.32.35182.2012091118154975644940588.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_006.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','repetition_time','0.347','0.6670-0.6670','NULL',0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (43,'2019-05-23 18:11:12','1.3.12.2.1107.5.2.32.35248.2015081323444190204268993.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_004.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (44,'2019-05-23 18:11:20','1.3.12.2.1107.5.2.32.35248.2015081323444190207368995.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_005.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (45,'2019-05-23 18:11:37','1.3.12.2.1107.5.2.32.35248.2015081323525130060281318.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_006.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (46,'2019-05-23 18:11:43','1.3.12.2.1107.5.2.32.35248.2015081323525130063381320.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_007.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (47,'2019-05-23 18:17:16','1.3.12.2.1107.5.2.32.35248.2017100419003887080086069.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_004.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (48,'2019-05-23 18:17:18','1.3.12.2.1107.5.2.32.35248.2017100419003887082486071.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_005.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (49,'2019-05-23 18:17:35','1.3.12.2.1107.5.2.32.35248.2017100419082512308998394.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_006.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (50,'2019-05-23 18:17:41','1.3.12.2.1107.5.2.32.35248.2017100419082512311398396.0.0.0',52,'assembly/300203/V3/mri/native/demo_300203_V3_fieldmapBOLD_007.mnc','OTT203_300203_V3',300203,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (51,'2019-05-23 18:23:30','1.3.12.2.1107.5.2.32.35248.2015081319591998144579690.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_004.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (52,'2019-05-23 18:23:32','1.3.12.2.1107.5.2.32.35248.2015081319591998147479692.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_005.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (53,'2019-05-23 18:23:50','1.3.12.2.1107.5.2.32.35248.201508132007307229692015.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_006.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (54,'2019-05-23 18:23:51','1.3.12.2.1107.5.2.32.35248.201508132007307232692017.0.0.0',53,'assembly/300210/V2/mri/native/demo_300210_V2_fieldmapBOLD_007.mnc','OTT210_300210_V2',300210,'V2',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (55,'2019-05-23 18:26:33','1.3.12.2.1107.5.2.32.35412.2010011213140939401802789.0.0.0',55,'assembly/400162/V6/mri/native/demo_400162_V6_dwi25_001.mnc','ROM162_400162_V6',400162,'V6',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (56,'2019-05-23 18:29:02','1.3.12.2.1107.5.2.32.35412.2010091413482795437031334.0.0.0',56,'assembly/400168/V2/mri/native/demo_400168_V2_dwi25_001.mnc','ROM168_400168_V2',400168,'V2',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (57,'2019-05-23 18:29:48','1.3.12.2.1107.5.2.32.35248.2017100420055548450374372.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_004.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (58,'2019-05-23 18:29:51','1.3.12.2.1107.5.2.32.35248.2017100420055548453474374.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_005.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (59,'2019-05-23 18:30:04','1.3.12.2.1107.5.2.32.35248.2017100420133955621486697.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_006.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (60,'2019-05-23 18:30:06','1.3.12.2.1107.5.2.32.35248.2017100420133955623786699.0.0.0',54,'assembly/300324/V1/mri/native/demo_300324_V1_fieldmapBOLD_007.mnc','OTT324_300324_V1',300324,'V1',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (61,'2019-05-23 18:33:03','1.3.12.2.1107.5.2.32.35412.2011102016025718221356847.0.0.0',57,'assembly/400181/V6/mri/native/demo_400181_V6_dwi25_001.mnc','ROM181_400181_V6',400181,'V6',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (62,'2019-05-23 18:33:59','1.3.12.2.1107.5.2.32.35412.2011102016201854454305237.0.0.0',57,'assembly/400181/V6/mri/native/demo_400181_V6_fieldmapBOLD_001.mnc','ROM181_400181_V6',400181,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (63,'2019-05-23 18:34:02','1.3.12.2.1107.5.2.32.35412.2011102016201854456605239.0.0.0',57,'assembly/400181/V6/mri/native/demo_400181_V6_fieldmapBOLD_002.mnc','ROM181_400181_V6',400181,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (64,'2019-05-23 18:36:03','1.3.12.2.1107.5.2.32.35412.201210111648092321881038.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_001.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (65,'2019-05-23 18:36:05','1.3.12.2.1107.5.2.32.35412.201210111648092323981040.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_002.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (66,'2019-05-23 18:36:13','1.3.12.2.1107.5.2.32.35412.2012101116555052436094929.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_003.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (67,'2019-05-23 18:36:15','1.3.12.2.1107.5.2.32.35412.2012101116555052438194931.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_004.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (68,'2019-05-23 18:36:27','1.3.12.2.1107.5.2.32.35412.2012101117073992691129129.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_005.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (69,'2019-05-23 18:36:29','1.3.12.2.1107.5.2.32.35412.2012101117073992695029131.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_006.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (70,'2019-05-23 18:36:41','1.3.12.2.1107.5.2.32.35412.2012101117214497841150194.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_007.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (71,'2019-05-23 18:36:44','1.3.12.2.1107.5.2.32.35412.2012101117214497843450196.0.0.0',58,'assembly/400184/V3/mri/native/demo_400184_V3_fieldmapBOLD_008.mnc','ROM184_400184_V3',400184,'V3',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (72,'2019-05-23 18:38:38','1.3.12.2.1107.5.2.32.35412.2013121311111335569711228.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_001.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (73,'2019-05-23 18:38:40','1.3.12.2.1107.5.2.32.35412.2013121311111335572611230.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_002.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (74,'2019-05-23 18:38:43','1.3.12.2.1107.5.2.32.35412.2013121311122119894211656.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_dwi25_001.mnc','ROM221_400221_V5',400221,'V5',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (75,'2019-05-23 18:41:12','1.3.12.2.1107.5.2.32.35412.201001121337087991520153.0.0.0',61,'assembly/400261/V6/mri/native/demo_400261_V6_dwi25_001.mnc','ROM261_400261_V6',400261,'V6',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (76,'2019-05-23 18:41:29','1.3.12.2.1107.5.2.32.35412.2014071408265679232903659.0.0.0',60,'assembly/400248/V6/mri/native/demo_400248_V6_fieldmapBOLD_001.mnc','ROM248_400248_V6',400248,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (77,'2019-05-23 18:41:31','1.3.12.2.1107.5.2.32.35412.2014071408265679240003661.0.0.0',60,'assembly/400248/V6/mri/native/demo_400248_V6_fieldmapBOLD_002.mnc','ROM248_400248_V6',400248,'V6',NULL,63,'warning','repetition_time','0.489','0.6670-0.6670','NULL',0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (78,'2019-05-23 18:43:55','1.3.12.2.1107.5.2.32.35412.2010091414245345068889790.0.0.0',62,'assembly/400300/V1/mri/native/demo_400300_V1_dwi25_001.mnc','ROM300_400300_V1',400300,'V1',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (79,'2019-05-24 10:48:19','1.3.12.2.1107.5.2.32.35008.2010081720343224353634906.0.0.0',63,'assembly/676061/V1/mri/native/demo_676061_V1_dwi25_001.mnc','DCC292_676061_V1',676061,'V1',NULL,66,'warning','repetition_time','13.231','12.8000-12.8000,13.3000-13.3000','NULL',0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (80,'2019-05-28 10:22:23','1.3.12.2.1107.5.2.32.35008.2010081720343224353634906.0.0.0',63,'assembly/676061/V1/mri/native/demo_676061_V1_dwi25_001.mnc','DCC292_676061_V1',676061,'V1',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (81,'2019-05-28 10:22:48','1.3.12.2.1107.5.2.32.35008.2010081821440967619774016.0.0.0',30,'assembly/676061/V5/mri/native/demo_676061_V5_dwi25_001.mnc','DCC292_676061_V5',676061,'V5',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (82,'2019-05-28 10:23:18','1.3.12.2.1107.5.2.32.35140.2010011214522830227313535.0.0.0',34,'assembly/475906/V2/mri/native/demo_475906_V2_dwi25_001.mnc','DCC422_475906_V2',475906,'V2',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (83,'2019-05-28 10:23:24','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002259',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_001.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (84,'2019-05-28 10:23:24','1.3.12.2.1107.5.2.32.35140.30000011121514111901500002298',35,'assembly/475906/V3/mri/native/demo_475906_V3_fieldmapBOLD_002.mnc','DCC422_475906_V3',475906,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (85,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101218492748827554841.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_001.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (86,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101218492748830254843.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_002.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (87,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101219033142108075906.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_003.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (88,'2019-05-28 10:23:30','1.3.12.2.1107.5.2.32.35140.2012101219033142110675908.0.0.0',37,'assembly/475906/V4/mri/native/demo_475906_V4_fieldmapBOLD_004.mnc','DCC422_475906_V4',475906,'V4',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (89,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219241815691479077.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_001.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (90,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219241815694179079.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_002.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (91,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219423723861626780.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_003.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (92,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219423723864226782.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_004.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (93,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219564114092147845.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_005.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (94,'2019-05-28 10:23:49','1.3.12.2.1107.5.2.32.35140.2012101219564114095347847.0.0.0',40,'assembly/947103/V3/mri/native/demo_947103_V3_fieldmapBOLD_006.mnc','DCC702_947103_V3',947103,'V3',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (95,'2019-05-28 10:24:09','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_001.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00519,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (96,'2019-05-28 10:24:09','1.3.12.2.1107.5.2.32.35182.2011081519061874061859434.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_002.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (97,'2019-05-28 10:24:09','1.3.12.2.1107.5.2.32.35182.2011081519061874064159436.0.0.0',46,'assembly/300125/V1/mri/native/demo_300125_V1_fieldmapBOLD_003.mnc','MTL125_300125_V1',300125,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (98,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_001.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00519,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (99,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118092030115514600.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_002.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (100,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118092030120514602.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_003.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (101,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_004.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00519,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (102,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118154975641940586.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_005.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (103,'2019-05-28 10:24:20','1.3.12.2.1107.5.2.32.35182.2012091118154975644940588.0.0.0',50,'assembly/300144/V1/mri/native/demo_300144_V1_fieldmapBOLD_006.mnc','MTL144_300144_V1',300144,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00765,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (104,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323444190204268993.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_004.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (105,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323444190207368995.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_005.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (106,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323525130060281318.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_006.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (107,'2019-05-28 10:24:44','1.3.12.2.1107.5.2.32.35248.2015081323525130063381320.0.0.0',51,'assembly/300192/V1/mri/native/demo_300192_V1_fieldmapBOLD_007.mnc','OTT192_300192_V1',300192,'V1',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (108,'2019-05-28 10:25:04','1.3.12.2.1107.5.2.32.35412.2010011213140939401802789.0.0.0',55,'assembly/400162/V6/mri/native/demo_400162_V6_dwi25_001.mnc','ROM162_400162_V6',400162,'V6',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (109,'2019-05-28 10:25:22','1.3.12.2.1107.5.2.32.35412.2013121311111335569711228.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_001.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (110,'2019-05-28 10:25:22','1.3.12.2.1107.5.2.32.35412.2013121311111335572611230.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_fieldmapBOLD_002.mnc','ROM221_400221_V5',400221,'V5',NULL,63,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.00565,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (111,'2019-05-28 10:25:22','1.3.12.2.1107.5.2.32.35412.2013121311122119894211656.0.0.0',59,'assembly/400221/V5/mri/native/demo_400221_V5_dwi25_001.mnc','ROM221_400221_V5',400221,'V5',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); +INSERT INTO `mri_violations_log` (`LogID`, `TimeRun`, `SeriesUID`, `TarchiveID`, `MincFile`, `PatientName`, `CandID`, `Visit_label`, `CheckID`, `MriScanTypeID`, `Severity`, `Header`, `Value`, `ValidRange`, `ValidRegex`, `EchoTime`, `PhaseEncodingDirection`, `EchoNumber`, `MriProtocolChecksGroupID`) VALUES (112,'2019-05-28 10:25:31','1.3.12.2.1107.5.2.32.35412.201001121337087991520153.0.0.0',61,'assembly/400261/V6/mri/native/demo_400261_V6_dwi25_001.mnc','ROM261_400261_V6',400261,'V6',NULL,66,'warning','Manual Caveat Set by admin',NULL,NULL,NULL,0.102,NULL,NULL,1); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/test/RBdata.sql b/test/RBdata.sql index 2fb19139edb..53d89812d5a 100644 --- a/test/RBdata.sql +++ b/test/RBdata.sql @@ -1486,7 +1486,7 @@ UNLOCK TABLES; SET SQL_MODE=@OLD_SQL_MODE; DELETE FROM `mri_scan_type`; -INSERT INTO `mri_scan_type` (ID,Scan_type) VALUES +INSERT INTO `mri_scan_type` (MriScanTypeID,MriScanTypeName) VALUES (40,'fMRI'), (41,'flair'), (44,'t1'), @@ -1517,7 +1517,7 @@ LOCK TABLES `files` WRITE; DELETE FROM `files`; /*!40000 ALTER TABLE `files` DISABLE KEYS */; INSERT INTO `files` - (FileID,SessionID,File,SeriesUID,EchoTime,CoordinateSpace,OutputType,AcquisitionProtocolID,FileType,InsertedByUserID,InsertTime,SourcePipeline,PipelineDate,SourceFileID,ProcessProtocolID,Caveat,TarchiveSource,ScannerID,AcqOrderPerModality) + (FileID,SessionID,File,SeriesUID,EchoTime,CoordinateSpace,OutputType,MriScanTypeID,FileType,InsertedByUserID,InsertTime,SourcePipeline,PipelineDate,SourceFileID,ProcessProtocolID,Caveat,TarchiveSource,ScannerID,AcqOrderPerModality) VALUES (1,2138,'assembly/284119/Living_Phantom_DCC_SD_3t2/mri/native/loris_284119_Living_Phantom_DCC_SD_3t2_t2_001.mnc','1.3.12.2.1107.5.2.32.35008.2009052710301888858442230.0.0.0',0.499,'native','native',45,'mnc','lorisadmin',1468936070,NULL,NULL,NULL,NULL,0,1,NULL,NULL), (2,1189,'assembly/300002/V2/mri/native/loris_300002_V2_dti_001.mnc','1.3.12.2.1107.5.2.32.35182.2009060916562675500084624.0.0.0',0.102,'native','native',48,'mnc','lorisadmin',1468938713,NULL,NULL,NULL,NULL,0,2,NULL,NULL), @@ -1589,16 +1589,16 @@ LOCK TABLES `mri_protocol` WRITE; /*!40000 ALTER TABLE `mri_protocol` DISABLE KEYS */; DELETE FROM `mri_protocol`; INSERT INTO `mri_protocol` - (ID, CenterID, ScannerID, Scan_type, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max,slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) + (ID, CenterID, ScannerID, MriScanTypeID, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max,slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) VALUES(1000, NULL, 9, 48, 8000.0000, 14000.0000, 80.0000, 130.0000, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0, 200); INSERT INTO `mri_protocol` - (ID, CenterID, ScannerID, Scan_type, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) + (ID, CenterID, ScannerID, MriScanTypeID, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) VALUES(1001, NULL, 9, 40, 1900.0000, 2700.0000, 10.0000, 30.0000, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0, 500); INSERT INTO `mri_protocol` - (ID, CenterID, ScannerID, Scan_type, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) + (ID, CenterID, ScannerID, MriScanTypeID, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) VALUES(1002, NULL, 9, 44, 2000.0000, 2500.0000, 2.0000, 5.0000, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL); INSERT INTO `mri_protocol` - (ID, CenterID, ScannerID, Scan_type, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) + (ID, CenterID, ScannerID, MriScanTypeID, TR_min, TR_max, TE_min, TE_max, TI_min, TI_max, slice_thickness_min, slice_thickness_max, xspace_min, xspace_max, yspace_min, yspace_max, zspace_min, zspace_max, xstep_min, xstep_max, ystep_min, ystep_max, zstep_min, zstep_max, series_description_regex, time_min, time_max) VALUES(1003, NULL, 9, 45, 3000.0000, 9000.0000, 100.0000, 550.0000, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL); /*!40000 ALTER TABLE `mri_protocol` ENABLE KEYS */; UNLOCK TABLES; @@ -1625,7 +1625,7 @@ UNLOCK TABLES; LOCK TABLES `mri_violations_log` WRITE; DELETE FROM `mri_violations_log`; /*!40000 ALTER TABLE `mri_violations_log` DISABLE KEYS */; -INSERT INTO `mri_violations_log` (LogID,TimeRun,SeriesUID,TarchiveID,MincFile,PatientName,CandID,Visit_label,CheckID,Scan_type,Severity,Header,Value,ValidRange,ValidRegex) VALUES (1,'2016-08-15 15:06:21','1.3.12.2.1107.5.2.32.35182.2011081518290483992141556.0.0.0',17,'assembly/300135/V1/mri/native/loris_300135_V1_t1_001.mnc','MTL135_300135_V1',300135,'V1',NULL,NULL,'warning','Manual Caveat Set by admin',NULL,NULL,NULL),(2,'2016-08-15 15:06:56','1.3.12.2.1107.5.2.32.35182.2011081518290483992141556.0.0.0',17,'assembly/300135/V1/mri/native/loris_300135_V1_t1_001.mnc','MTL135_300135_V1',300135,'V1',NULL,NULL,'warning','Manual Caveat Set by admin',NULL,NULL,NULL),(3,'2016-08-15 15:06:58','1.3.12.2.1107.5.2.32.35182.2011081518290483992141556.0.0.0',17,'assembly/300135/V1/mri/native/loris_300135_V1_t1_001.mnc','MTL135_300135_V1',300135,'V1',NULL,NULL,'warning','Manual Caveat Set by admin',NULL,NULL,NULL); +INSERT INTO `mri_violations_log` (LogID,TimeRun,SeriesUID,TarchiveID,MincFile,PatientName,CandID,Visit_label,CheckID,MriScanTypeID,Severity,Header,Value,ValidRange,ValidRegex) VALUES (1,'2016-08-15 15:06:21','1.3.12.2.1107.5.2.32.35182.2011081518290483992141556.0.0.0',17,'assembly/300135/V1/mri/native/loris_300135_V1_t1_001.mnc','MTL135_300135_V1',300135,'V1',NULL,NULL,'warning','Manual Caveat Set by admin',NULL,NULL,NULL),(2,'2016-08-15 15:06:56','1.3.12.2.1107.5.2.32.35182.2011081518290483992141556.0.0.0',17,'assembly/300135/V1/mri/native/loris_300135_V1_t1_001.mnc','MTL135_300135_V1',300135,'V1',NULL,NULL,'warning','Manual Caveat Set by admin',NULL,NULL,NULL),(3,'2016-08-15 15:06:58','1.3.12.2.1107.5.2.32.35182.2011081518290483992141556.0.0.0',17,'assembly/300135/V1/mri/native/loris_300135_V1_t1_001.mnc','MTL135_300135_V1',300135,'V1',NULL,NULL,'warning','Manual Caveat Set by admin',NULL,NULL,NULL); /*!40000 ALTER TABLE `mri_violations_log` ENABLE KEYS */; UNLOCK TABLES; diff --git a/test/unittests/UtilityTest.php b/test/unittests/UtilityTest.php index a38a61348c6..18af8c6599b 100644 --- a/test/unittests/UtilityTest.php +++ b/test/unittests/UtilityTest.php @@ -1144,15 +1144,18 @@ public function testGetScanTypeList() $this->_dbMock->expects($this->once())->method('pselect') ->with( $this->stringContains( - "JOIN files f ON (f.AcquisitionProtocolID=mri.ID)" + "JOIN files f ON (f.MriScanTypeID=mri.ID)" ) ) ->willReturn( - [0 => ['ID' => 123, - 'Scan_type' => 'scan 1' - ], - 1 => ['ID' => 234, - 'Scan_type' => 'scan 2' + [ + 0 => [ + 'ID' => 123, + 'Name' => 'scan 1' + ], + 1 => [ + 'ID' => 234, + 'Name' => 'scan 2' ] ] ); diff --git a/tools/importers/CouchDB_MRI_Importer.php b/tools/importers/CouchDB_MRI_Importer.php index dd4714920ff..f8436db5f34 100644 --- a/tools/importers/CouchDB_MRI_Importer.php +++ b/tools/importers/CouchDB_MRI_Importer.php @@ -195,10 +195,10 @@ function _getQueryForSelectedFiles($whatToSelect, $scanType) { return "SELECT $whatToSelect " . 'FROM files f ' - . 'LEFT JOIN mri_scan_type msc ON (f.AcquisitionProtocolID=msc.ID) ' + . 'LEFT JOIN mri_scan_type mst USING (MriScanTypeID) ' . 'LEFT JOIN files_qcstatus fqs USING (FileID) ' . 'WHERE f.SessionID=s.ID ' - . "AND msc.Scan_type='$scanType' " + . "AND mst.MriScanTypeName='$scanType' " . 'AND fqs.selected=\'true\''; } @@ -462,13 +462,12 @@ function updateCandidateDocs($data, $ScanTypes) */ public function getScanTypes() { - $ScanTypes = $this->SQLDB->pselect( - "SELECT DISTINCT msc.Scan_type as ScanType, f.AcquisitionProtocolID - FROM mri_scan_type msc - JOIN files f ON msc.ID= f.AcquisitionProtocolID - JOIN files_qcstatus fqc ON f.FileID=fqc.FileID - ORDER BY f.AcquisitionProtocolID", + "SELECT DISTINCT MriScanTypeID, MriScanTypeName AS ScanType + FROM mri_scan_type + JOIN files USING (MriScanTypeID) + JOIN files_qcstatus fqc USING (FileID) + ORDER BY MriScanTypeID", [] ); @@ -489,7 +488,7 @@ public function getCandidateData($ScanTypes) foreach ($CandidateData as $row) { foreach ($ScanTypes as $scanType) { - $scan_type = $scanType['ScanType']; + $scan_type = $scanType['MriScanTypeName']; if (!empty($row['Selected_' . $scan_type])) { $fileID = $this->SQLDB->pselectOne( "SELECT FileID FROM files WHERE BINARY File=:fname", diff --git a/tools/mri_violations_resolver.php b/tools/mri_violations_resolver.php index b7ea3d96e4a..f6590d976a5 100755 --- a/tools/mri_violations_resolver.php +++ b/tools/mri_violations_resolver.php @@ -72,7 +72,7 @@ s.ProjectID as Project, s.CohortID as Cohort, MincFile, - mri_scan_type.Scan_type, + mri_scan_type.MriScanTypeName as ScanType, 'Protocol Violation', SeriesUID, md5(concat_WS(':',MincFile,PatientName,SeriesUID,TimeRun)) as hash, @@ -80,8 +80,8 @@ p.CenterID as Site, violations_resolved.Resolved as Resolved FROM mri_violations_log - LEFT JOIN mri_scan_type - ON (mri_scan_type.ID=mri_violations_log.Scan_type) + LEFT JOIN mri_scan_type mst + ON (mst.MriScanTypeID=mri_violations_log.MriScanTypeID) LEFT JOIN violations_resolved ON (violations_resolved.ExtID=mri_violations_log.LogID AND violations_resolved.TypeTable='mri_violations_log') diff --git a/tools/single_use/Update_scan_type_of_mri_violations_log_when_manual_caveat.php b/tools/single_use/Update_scan_type_of_mri_violations_log_when_manual_caveat.php index 304fddcfb8a..90b82045104 100644 --- a/tools/single_use/Update_scan_type_of_mri_violations_log_when_manual_caveat.php +++ b/tools/single_use/Update_scan_type_of_mri_violations_log_when_manual_caveat.php @@ -23,17 +23,17 @@ // select all SeriesUID missing data from mri_violations_log $db = $lorisInstance->getDatabaseConnection(); $seriesUIDs_list = selectManualCaveat($db); -// loop through all SeriesUID to update the Scan_type field in +// loop through all SeriesUID to update the MriScanTypeID field in // mri_violations_log foreach ($seriesUIDs_list as $seriesUID) { updateScanType($seriesUID['SeriesUID'], $db); } /** - * Selects all SeriesUIDs for which Scan_type is set to NULL and Headers set + * Selects all SeriesUIDs for which MriScanTypeID is set to NULL and Headers set * to "Manual Caveat Set by%" in the mri_violations_log. * - * @return array of seriesUID without Scan_type set in mri_violations_log + * @return array of seriesUID without MriScanTypeID set in mri_violations_log * @throws DatabaseException */ function selectManualCaveat($db) @@ -41,7 +41,7 @@ function selectManualCaveat($db) $query = "SELECT DISTINCT(SeriesUID) FROM mri_violations_log WHERE HEADER LIKE \"Manual Caveat Set by%\" - AND Scan_type IS NULL"; + AND MriScanTypeID IS NULL"; $result = $db->pselect($query, []); @@ -63,7 +63,7 @@ function updateScanType($seriesUID, $db) { // select scan type for the SeriesUID given as an argument $scan_type_list = $db->pselectCol( - "SELECT AcquisitionProtocolID FROM files WHERE SeriesUID=:seriesUID", + "SELECT MriScanTypeID FROM files WHERE SeriesUID=:seriesUID", ['seriesUID' => $seriesUID] ); @@ -73,7 +73,7 @@ function updateScanType($seriesUID, $db) print "Updating scan type to $scan_type for SeriesUID $seriesUID \n"; $db->update( 'mri_violations_log', - ['Scan_type'=>$scan_type], + ['MriScanTypeID'=>$scan_type], ['SeriesUID'=>$seriesUID] ); } elseif (count($scan_type_list) == 0) {