From f0fa3adc1e10149f2c591ea0564a62d16ee7f312 Mon Sep 17 00:00:00 2001
From: cmadjar <cecile.madjar@gmail.com>
Date: Thu, 22 May 2025 14:15:48 -0400
Subject: [PATCH 1/2] fix bug

---
 uploadNeuroDB/minc_insertion.pl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/uploadNeuroDB/minc_insertion.pl b/uploadNeuroDB/minc_insertion.pl
index 7462361a5..b0f4bdd62 100755
--- a/uploadNeuroDB/minc_insertion.pl
+++ b/uploadNeuroDB/minc_insertion.pl
@@ -403,7 +403,7 @@ =head2 Methods
     $is_valid = 1; # if it is HRRT datasets, mark study as valid
 }
 
-if (($is_valid == 0) && ($force==0)) {
+if (!$is_valid && !$force) {
     $message = "\n ERROR: The validation has failed. ".
                "Either run the validation again and fix ".
                "the problem. Or use -force to force the ".

From 9c51c90344b66b7b196d4a566e0e2a7811925894 Mon Sep 17 00:00:00 2001
From: cmadjar <cecile.madjar@gmail.com>
Date: Thu, 22 May 2025 14:40:01 -0400
Subject: [PATCH 2/2] more bug fix

---
 uploadNeuroDB/minc_insertion.pl | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/uploadNeuroDB/minc_insertion.pl b/uploadNeuroDB/minc_insertion.pl
index b0f4bdd62..cb888accc 100755
--- a/uploadNeuroDB/minc_insertion.pl
+++ b/uploadNeuroDB/minc_insertion.pl
@@ -355,9 +355,6 @@ =head2 Methods
     $is_valid        = $array[0];
     $ArchiveLocation = $array[1];
 
-    # create the studyInfo object
-    %studyInfo = $utility->createTarchiveArray($ArchiveLocation);
-
 } elsif ($tarchive) {
     my $mriUploadOB = NeuroDB::objectBroker::MriUploadOB->new(db => $db);
     my $mriUploadsRef = $mriUploadOB->getWithTarchive(GET_COLUMNS, $tarchive);
@@ -383,6 +380,8 @@ =head2 Methods
         my %row          = %{ $mriUploadsRef->[0] };
         $is_valid        = $row{'isTarchiveValidated'};
         $upload_id       = $row{'UploadID'};
+        $ArchiveLocation = $tarchive;
+        $ArchiveLocation =~ s/$tarchiveLibraryDir//;
     }
 
 } elsif ($hrrt) {
@@ -419,8 +418,11 @@ =head2 Methods
 
 ## Construct the tarchiveinfo Array and the MINC file object
 
-# Create the study info array
-%studyInfo = $utility->createTarchiveArray($ArchiveLocation, $hrrt);
+# Create the study info array if ArchiveLocation is defined, otherwise, will populate
+# with MINC file header later on
+if (defined $ArchiveLocation) {
+    %studyInfo = $utility->createTarchiveArray($ArchiveLocation, $hrrt);
+}
 
 # Create the MINC file object and maps DICOM fields
 my $file = $utility->loadAndCreateObjectFile($minc, $upload_id);