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Add option to prefix scaffold/contig names #1518

@jolespin

Description

@jolespin

Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.

Sometimes when I run a bunch of large assemblies and concatenate the results I will get contigs with the same names from different samples. I've added a prefix modifier in https://github.com/jolespin/veba but this gets complicated with the assembly graph if I want to use that later on.

Describe the solution you'd like

Incorporate an optional prefix early on so the assembly graph can be 1-to-1 with the assembly fasta

Describe alternatives you've considered

Post hoc for the assembly

Additional context

No response

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