Build SPAdes-4.2.0 fails under Linux

[alienzj]

Description of bug

Missing cstdint Header:

The primary error occurs in binary.hpp where uint64_t and uint8_t are not recognized because the <cstdint> header is missing. This causes subsequent errors in functions like encodeULEB128 and decodeULEB128.

Full log file:
build.log

Or from build log of BioArchLinux:
https://build.bioarchlinux.org/api/pkg/spades/log/1753834621

spades.log

OS information:

Kernel: Linux 6.12.40
GCC: gcc (GCC) 15.1.1 20250425
cmake: cmake version 4.0.3-dirty

params.txt

cmake -B build -S spades-4.2.0/src \
    -DCMAKE_INSTALL_PREFIX=/usr \
    -DCMAKE_SKIP_INSTALL_RPATH=ON \
    -DCMAKE_BUILD_TYPE=None \
    -DZLIB_ENABLE_TESTS=OFF \
    -DSPADES_BUILD_INTERNAL=OFF

  make -C build

SPAdes version

4.2.0

Operating System

ArchLinux 6.12.40

Python Version

Python 3.13.5

Method of SPAdes installation

manual

No errors reported in spades.log

• Yes

[asl]

Should be fixed after #1507