Error running rna-Spades

[d-kk]

Description of bug

While running rnaSpades we see this warning, previously have seen this error and the program executed to completion.

Is the rnaSpades output valid in this case? Should we be concerned about the output?

Thanks and lmk if you need more info.

0:20:02.343 10M / 65G INFO General (kmer_splitter.hpp : 101) Using cell size of 17476
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304

spades.log

Run did not fail, is program output valid given this error:

0:20:02.343 10M / 65G INFO General (kmer_splitter.hpp : 101) Using cell size of 17476
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304
mimalloc: warning: unable to allocate from region: size 4194304

params.txt

Run did not fail, pl see above.

SPAdes version

3.15.4

Operating System

ubuntu

Python Version

2.7.17

Method of SPAdes installation

binaries

No errors reported in spades.log

• Yes

[asl]

Hello

These warnings are benign. You can ignore them